XLOC_019881


Basic Information

Item Value
gene id XLOC_019881
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 45121362 ~ 45123821 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039708
GTCTGGTCTCATCTTTTATTGTAAAACTGGaagaaatgtacagtatattccAGGCAACACtatattacattttacaataaaggTTTCTATACAAGCATTGCTATAATAAATCACTCGGGGGGGTCTGAAATCTTGTTTACGCGCGCGTTACATACAACTAACTACAGGAGTTTATTCAAAGTATGAGCATGAAATATCGACTTTCTAATGACGCACATCTGTGAATTACATAAAGACAGCATCTTTCTGAAATGTGTGACGTTTTACAATTGTACAACatataaaacacaacacacatgAACAGAATCTGGTGGGAAACTGAAAACTAGAGCCGAACTTTGCTGGTGTGGTCAGTTACACGACGAGGATACATCAGTCAAATCAGCAGAGACATCTACATTTCAACAGTTGCCTTAATGCTGAACATGTGTTGCATAGAGATATAGATGAACCAGCACGAAGACACACCAGTACAGGGTTTTCAAACAAACGCATGGAAATAAAATTCCTTCTTGAGCTTAGGCCCTTGGCATTTTGTCATGATCTCAATGTTAATCAGAAAgtctcacacacaaatacactacagtaatttatagtaaataccagagtgtttttgaaccacactatagtgaagtgtattatactgtagtaTCTACAGCTGTTGGTTAATGTGTGCTGTAGCATTAATTGTATCAAAATGATAAGCTGTGataaatactgtagtttactgtTCACTACAGTAAGCTATGGTGTATTGTAATATAACATGACATTTAGTtgttgaaaactacagtattggctcatttgtttatatttgtatagttgtagtgttaccatagcaactgtagcaTCACCACAATAATTTGACTACTATAGCtgtagtgttaccatagcaacagtgaAATCGCCAAAACAGATTGATTTCTATAGTtgtagtgttaccatagcaactgtagaatcaacacattagattgacttctatagttgttgtgttaccatagaaaaTGTAGAACCACCAAAACAATTTGACTATTTTATTTgtagtgttaccatagcgactgtggAATCATCACAACCGATTGACCACTATAGCtgtagtgttaccatagcaattgcagaatcaccacaacaattTGATTATTATAGTTGtagtgtcaccatagcaactgtagaatcactgcaataatttaatTATTATAGTtgtagtgttaccatagcaactgtagaatcaccacaacaattTGACAATTATAGTTgcagttaccatagcaactgtagaatcaccacaaaagaTTGACTATTATAGTTgtagtgttaccatagcgactgtagaatcgcATCAACAATTTGACTATTATAGATGTAGTGTTGCCATAGTGACTGTGGAATCATCACAACCGATTGACCACTATAGCtgtagtgttaccatagcaattgcAGAATCACCATAACAATTTGATTATTATAGTTGtagtgtcaccatagcaactgtagaatcactgcaataatttaatattagaattgaagtgttaccatagcaactgtagaattaccacaacaatTTGACTATTATAGTTGTAGTGTTACCATAAtaactgtggaatcaccacaacagattaatgtAAACTCTATAATGCAGAATGGTTAAAAAATGTTACAATATTTACTATAAAGCACTACAGTATTTTACCATGTTTGGTGAATTGAATATCTCTGTGTGATTAATAACAGAAGAAtactgatgaaggaggaggtttCATTCACCATGTAGGAATGAATTTTAGACATAAACACGGCAGAGCAACACACCACACCAACGGTTTCGTccatattttgaaatgtattattcagtaaatgtgtttccgTCATAGTCTATCTGCACATATATTATAGTGTGTTTTTCACTGTGCATCTCGccatttccattaagcattttattGAAGTGAAATTCCAAAATGCAAATAGAaatgaattcattttatttattagaggtTTTCTTTCACAAATTAAGACCTTCCAAAAGATCAGTTTTTATACCCAATGTCAAAATCTGAATTTCTCAGGGTGTCAGAACTTTTTCAAGTCATACATTATTTTCAACACAAATGGCTGAAAACAAAACACTGTTCTGCTGGTTTCTGATTTACTGAACAGCGACAACAAATGACGACAGCTCTTCACATGCTCGACTGATGGAGAAATGATGATGtgaagcacacacaaacacaagacgGAGGAGTCTTtaacactgaactaaactaatgTTCATGACGAGGACACAAACAGTCTGCGCACGATCCAGAGTAATGAAGACGAATGATGTAGACTTGTGTGTGACTCAATGAGGCACGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039708 True 2353 lncRNA 0.35 2 45121362 45123821

Neighbor

gene id symbol gene type direction distance location
XLOC_019880 rapgef6 coding downstream 35192 45041684 ~ 45086170 (-)
XLOC_019879 NA coding downstream 336156 44782268 ~ 44785206 (-)
XLOC_019878 kif4 coding downstream 348624 44735181 ~ 44772738 (-)
XLOC_019877 ammecr1 coding downstream 389497 44709280 ~ 44731865 (-)
XLOC_019876 CU855912.1 coding downstream 553096 44568180 ~ 44568266 (-)
XLOC_019882 NA coding upstream 40993 45164814 ~ 45188233 (-)
XLOC_019883 vdac1 coding upstream 66761 45190582 ~ 45210092 (-)
XLOC_019884 skp1 coding upstream 217965 45341786 ~ 45349548 (-)
XLOC_019885 PPP2CA coding upstream 227839 45351660 ~ 45363956 (-)
XLOC_019886 cdkn2aipnl coding upstream 253390 45377211 ~ 45382195 (-)
XLOC_019872 NA non-coding downstream 963592 44157073 ~ 44157770 (-)
XLOC_019864 NA non-coding downstream 1421082 43684862 ~ 43700280 (-)
XLOC_019853 AL954767.1 non-coding downstream 1728283 43390401 ~ 43393079 (-)
XLOC_019887 NA non-coding upstream 367406 45491227 ~ 45492856 (-)
XLOC_019891 NA non-coding upstream 564114 45687935 ~ 45709745 (-)
XLOC_019893 NA non-coding upstream 707220 45831041 ~ 45837230 (-)

Expression


Co-expression Network