XLOC_019882


Basic Information

Item Value
gene id XLOC_019882
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 45164814 ~ 45188233 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039709
CTCGACCAGAACGTCCACGAGGCCATGCCTTCGCTCAAGATGACCAACGACTACATCTTCTGAGCTGCACACCGTGTCTTATTTAATCAGGGGAGAATGTGAGGTAACACTTTACCTGAACGGGTGTTCATAAGACTACCATTAAAGGTTTATAATCACGACACGACTCGTGGATATGGAGAAGAGGTTATGACAATTGTTATTCATTCAGTTATGTCATTTTCAAGGCAAATATGATGTTGATTGAGATGTCTTTATGGCAACCTGACATATCAAAATacatcatgacaacttgacataaacattCATAATGATCTGTTTTTATCAAGACAACATCGTTAACAtcgtcatgaggccattataattgtctTATGCATATTTTCCTGACCACTTTTCCCAGTGGAACAAATTTAATTTGTCAAGAAAATTTCCCTGTAAAAGTGTTAATATGCCGgagaattattttattaaagcatcattaatatttaatgacatctAATGATATTTTCTTTATTTCGTTGCACTGTAGGTGGGGTCAAGTAAAAATGTTAATGATGCTGTTgtaaaaaaaaagaaaaaaa
>TCONS_00039109
CCCAAAGCGCGGTGGCTGTACTGCGCATGCGGCTCGGTGACGTCAGCAGAAGATGGCTGCGGTGCGACAGACGCCACTGGAGGACTCAACGATGGTGAAAGTTTTAGTTTTAGTGTCAATGCTGGTGTTTTCCGTGAGCTGCGCTTCACTTCCAATCGCAGATGGTGAACCCCCAGCCACTGTGGACAGTAAAGAGGTGAAAGCTCCAGATACACAGAACAGCAGTGATCTGAGTAGCCCGATCGACAGTACTTTGAGTCAGTCGGCAGAGGTGTTGGGTGATGATTCAGCTCCTGCTGTTGAgggtaaaaacagcaacaaatcagTAGATGTTCCCACTGCTCCAATTGCTAATAAAGATACAGAACCACAAGATAATGATCCGAAGAAGCAGAAAAACAACACAGAGAATCTCAAAAGCGACACGGGGaaacaaaaaaatgatttaaagctGGAAACTGACCCCAAGCAGCCGAAAACCGACCTCAATCAGCTGGAAACCGAGCCCAAGCAGCTGGAAACCGAGCTCAAGCAGCCAGAAACCGAGCCCAAGCAGTTGGAAACCGAGTCCAAGCAGCCGAAAACCGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAGTCGGAAACTGAGCCCAAGCAGTCGGAAACTGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAGTCGGAAACTGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAGTCGGATACCGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAACAGTTGGAAACCGAGCCCAAGCAACAGTTGGAAACCGAGTCCAAGCAGCCGGTAACCGAGAACAAGCAGCTGGAAACCGAGAACAAGCAGCAGAATAATGACCCTGTGCAGAAGGGTGACGACTCTGTGCAGCCAAAAAATGACCACAAGCAGCAGGATAATGACCCAGAGCACCTGAAACCCTCCCCTGCAGCACCGCAGCCACAGAACTTTACAGAGTACATCGCTGAAAGCACGTTTTTAGGACCAGATCTGGGCTTTGGTGATGACACAGGCAACGACGAAGATGATGATggcgacgatgatgatgatgaagttgTTGATGAGAATGATGTAAGCAATGATGTTGAAGTTAAGGGTGGAAGCTCGTGGGATGACATCAGCTCTCCTGAGGATAgccaaggaaaaaaaaattaccctCAGGGTTACAAAACTCCTCCTGAGAGCTCAGAGATAAACATCTACAGCACCCAGGATGAAGACTCGCACTTCTTCTTCCATCTGGTTATCATCGCCTTCCTGGTGGCCATCATCTACATTACCTACCACAACAAGAGAAAGCTTATGTTGTTGGCCCAGAGCCGGCGCTGGAGGGATGGGTTCTGCTCACGGGGTGTGGAGTATCACCGGCTCGACCAGAACGTCCACGAGGCCATGCCTTCGCTCAAGATGACCAACGACTACATCTTCTGAGCTGCACACCGTGTCTTATTTAATCAGGGGAGAATGTGAGGTAACACTTTACCTGAACGGGTGTTCATAAGACTACCATTAAAGGTTTATAATCACGACACGACTCGTGGATATGGAGAAGAGGTTATGACAATTGTTATTCATTCAGTTATGTCATTTTCAAGGCAAATATGATGTTGATTGAGATGTCTTTATGGCAACCTGACATATCAAAATacatcatgacaacttgacataaacattCATAATGATCTGTTTTTATCAAGACAACATCGTTAACAtcgtcatgaggccattataattgtctTATGCATATTTTCCTGACCACTTTTCCCAGTGGAACAAATTTAATTTGTCAAGAAAATTTCCCTGTAAAAGTGTTAATATGCCGgagaattattttattaaagcatcattaatatttaatgacatctAATGATATTTTCTTTATTTCGTT
>TCONS_00039110
TCGGAAACCGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAGTCGGAAACCGAGCCCAAGCAACAGTTGGAAACCGAGCCCAAGCAACAGTTGGAAACCGAGTCCAAGCAGCCGAATAATGACCCTGTGCAGAAGGGTGACGACTCTGTCACGTTTTTAGGACCAGATCTGGGCTTTGGTGATGACACAGGCAACGACGAAGATGATGATggcgacgatgatgatgatgaagttgTTGATGAGAATGATGATAAGATAAACATCTACAGCACCCAGGATGAAGACTCGCACTTCTTCTTCCATCTGGTTATCATCGCCTTCCTGGTGGCCATCATCTACATTACCTACCACAACAAGAGAAAGCTTATGTTGTTGGCCCAGAGCCGGCGCTGGAGGGATGGGTTCTGCTCACGGGGTGTGGAGTATCACCGGCTCGACCAGAACGTCCACGAGGCCATGCCTTCGCTCAAGATGACCAACGACTACATCTTCTGA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-120215-136 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human C5orf15 (chromosome 5 open reading frame 15).

Ensembl:

ensembl_id ENSDARG00000090747

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039709 False 581 lncRNA 0.35 2 45164814 45182824
TCONS_00039109 False 2210 mRNA 0.49 3 45182305 45188233
TCONS_00039110 True 495 mRNA 0.52 6 45182762 45186431

Neighbor

gene id symbol gene type direction distance location
XLOC_019881 NA coding downstream 40993 45121362 ~ 45123821 (-)
XLOC_019880 rapgef6 coding downstream 78644 45041684 ~ 45086170 (-)
XLOC_019879 NA coding downstream 379608 44782268 ~ 44785206 (-)
XLOC_019878 kif4 coding downstream 392076 44735181 ~ 44772738 (-)
XLOC_019877 ammecr1 coding downstream 432949 44709280 ~ 44731865 (-)
XLOC_019883 vdac1 coding upstream 2349 45190582 ~ 45210092 (-)
XLOC_019884 skp1 coding upstream 153553 45341786 ~ 45349548 (-)
XLOC_019885 PPP2CA coding upstream 163427 45351660 ~ 45363956 (-)
XLOC_019886 cdkn2aipnl coding upstream 188978 45377211 ~ 45382195 (-)
XLOC_019887 NA coding upstream 302994 45491227 ~ 45492856 (-)
XLOC_019876 CU855912.1 non-coding downstream 596548 44568180 ~ 44568266 (-)
XLOC_019872 NA non-coding downstream 1007044 44157073 ~ 44157770 (-)
XLOC_019864 NA non-coding downstream 1464534 43684862 ~ 43700280 (-)
XLOC_019891 NA non-coding upstream 499702 45687935 ~ 45709745 (-)
XLOC_019893 NA non-coding upstream 642808 45831041 ~ 45837230 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000014_00108612_00113277 NA coding CI01000014 null 108612 ~ 113564 (+)