XLOC_019883 (vdac1)


Basic Information

Item Value
gene id XLOC_019883
gene name vdac1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 45190582 ~ 45210092 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039111
CCGGCGTGTGCGCGCGCACGTCTCTCCTCTCCACTGTCGGCTGAGCTGCTGTCCTCTCCATCCACACAGAGACTATGGCTGTTCCTCCCACATATGTGGATCTGGGCAAATCTGCCAGAGACATCTTCACCAAAGGATATGGATTCGGTCTCATTAAACTGGACTTGAAAACGAGGTCAGAGAATGGACTGGAGTTCAAGAGCTCCGGCTCGGCCAACACAGAGACCAGTAAAGTAGCAGGAACTCTGGAGACCAAGTACAAGTGGGCTGAACACGGCCTGACCTTCACTGAGAAGTGGAACACGGACAACACTCTGGGCACAGAGATCACCCTGGAGGACCAGCTGACCAAAGGGCTGAAGCTTACATTCGACTCCTCCTTTTCTCCAAACACTGGTAAGAAGAGTGGTAAGATCAAGAGCAGTTACCAGCGCGAGCACATTAACCTGGGCTGTGACGTGGACTACGACATCAACGGGACGGCGGTGCACGGAGCGCTGGTGCTGGGCCTGGACGGATGGCTCGCCGGGTACCAGATGACCTTCGAGGCCGGCAGGAACCGCATCACACAGAGCAACTTCGCTGTGGGATACAAGACCGACGAGTTCCAGCTCCACACCAATGTGAATGACGGCACAGAGTTCGGCGGCTCCATCTACCAGAAGGTGAACGATAATCTGGAGACGGCGGTGAATCTGGCCTGGACCGCCGGGAACAGCAACACTCGCTTCGGCATTGCAGCCAAATACCAAATCGACAGCGACGCGGCCTTCTCGGCCAAAGTGAATAACTCGAGCCTTGTCGGGCTGGGATACACTCAAACTCTGAAGCCTGGTATTAAGCTGACCCTTTCTGCTCTTCTGGATGGCAAGAACATTAACGCCGGAGGCCACAAGATGGGTTTGGGTCTGGAGTTTGAGGCATAAGAAGCTGTGGATTGCTCCGATCCTGACTTCATTTAATATTACACACTTTATTTTCTATCCCCACACCCTCACACACCTTATTTCTCCTGAGCAGGAACACACACGGTATACCTGGAGACATGTATGCATTAGCAGCGGCTCACTTTCCCAGAGAGAAACACTATTAGAGAAGAGCGCTCCCCGGTTTATAAGATGTTTTGTCTTCAACACACTCTGcgttatttatttcagtgttcaTACTTTACAGATGCTCATTTCTTTGTGGAAGTTTACGTCAGAAAACACTAGATTGACATTCCTGATCTTCAGAAAGAGAGCCTGCAGCTCTTTATGATAGATTCCACACGTTTGGGTGCGTCTCATGTCTCcgtctggtgtgtgtgtgcgagtaaTCCACATGTGTGTCGTTGTTTTAGCGCTGCATACTACCTGCTGCGTCCGTGCAGAGCTCCTGAAAACAGAAGTGTGTGTCGGGAAGAGCACGAGTGACGTGCAGTTCTGGATGTAGGCTTGTCTTCCATTGTTACATGTAGGATTAGGAAGCTGTGGATTTAGCAGGATGGAGTCCTTCCTTACGTTGAATAAAACGTTCGACCTGTATCACACCTA
>TCONS_00039112
ggaggaagaaatgTCGGACGCAGATGAAGTGGGAAATTCGAAAAATGAATGGATTACAGTAGAAAAAcggaaaagaaacagaagctggaGTAATACATCTGAGACTGACAGTGAGAACGGAATGCATCAGACAAGACGAAGGAAAGAAGAGTTTAAGACTATGGCTGTTCCTCCCACATATGTGGATCTGGGCAAATCTGCCAGAGACATCTTCACCAAAGGATATGGATTCGGTCTCATTAAACTGGACTTGAAAACGAGGTCAGAGAATGGACTGGAGTTCAAGAGCTCCGGCTCGGCCAACACAGAGACCAGTAAAGTAGCAGGAACTCTGGAGACCAAGTACAAGTGGGCTGAACACGGCCTGACCTTCACTGAGAAGTGGAACACGGACAACACTCTGGGCACAGAGATCACCCTGGAGGACCAGCTGACCAAAGGGCTGAAGCTTACATTCGACTCCTCCTTTTCTCCAAACACTGGTAAGAAGAGTGGTAAGATCAAGAGCAGTTACCAGCGCGAGCACATTAACCTGGGCTGTGACGTGGACTACGACATCAACGGGACG
>TCONS_00039113
TCCACACAGAGACTATGGCTGTTCCTCCCACATATGTGGATCTGGGCAAATCTGCCAGAGACATCTTCACCAAAGGATATGGATTCGGTCTCATTAAACTGGACTTGAAAACGAGGTCAGAGAATGGACTGGAGTTCAAGAGCTCCGGCTCGGCCAACACAGAGACCAGTAAAGTAGCAGGAACTCTGGAGACCAAGTACAAGTGGGCTGAACACGGCCTGACCTTCACTGAGAAGTGGAACACGGACAACACTCTGGGCACAGAGATCACCCTGGAGGACCAGGTCAGACCGAGAGCACCCAAACACACCAGGGCTGCACAATGATGGAAAAACATGACTCTTCGATATCTAGTTTTTCtgcaaattatttattgtatttaattattattgtttttatttttatttctatttatttaaaaaaatatttatttaatttcactttttaaaaattgtattttaattttcatttattcatttttattttattttcatttttatttacttttgttttaattttgattcattttaattttattttttaatcattttgttttatttactataCATACAATTGTTCAAAGTAATAGCAATACAGACAAACGCATTGGGAACACTGGGAAAATAATggttaaatgtattattactttA

Function

symbol description
vdac1 Predicted to enable voltage-gated anion channel activity. Predicted to act upstream of or within anion transmembrane transport and apoptotic process. Predicted to be located in membrane raft; mitochondrion; and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of pore complex. Predicted to be active in mitochondrial outer membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human VDAC1 (voltage dependent anion channel 1).

GO:

id name namespace
GO:0098656 anion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006820 anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0008308 voltage-gated anion channel activity molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway
ko04022 cGMP-PKG signaling pathway
ko04217 Necroptosis
ko04218 Cellular senescence
ko04613 Neutrophil extracellular trap formation
ko04621 NOD-like receptor signaling pathway
ko04979 Cholesterol metabolism
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05166 Human T-cell leukemia virus 1 infection
ko05164 Influenza A
ko05131 Shigellosis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05415 Diabetic cardiomyopathy
ko03029 Mitochondrial biogenesis
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-030131-6514 Predicted to enable voltage-gated anion channel activity. Predicted to act upstream of or within anion transmembrane transport and apoptotic process. Predicted to be located in membrane raft; mitochondrion; and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of pore complex. Predicted to be active in mitochondrial outer membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human VDAC1 (voltage dependent anion channel 1).

Ensembl:

ensembl_id ENSDARG00000045132

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039111 False 1535 mRNA 0.51 9 45190582 45210092
TCONS_00039112 False 568 processed_transcript 0.48 6 45197342 45209405
TCONS_00039113 True 650 lncRNA 0.34 4 45198307 45210032

Neighbor

gene id symbol gene type direction distance location
XLOC_019882 NA coding downstream 2349 45164814 ~ 45188233 (-)
XLOC_019881 NA coding downstream 66761 45121362 ~ 45123821 (-)
XLOC_019880 rapgef6 coding downstream 104412 45041684 ~ 45086170 (-)
XLOC_019879 NA coding downstream 405376 44782268 ~ 44785206 (-)
XLOC_019878 kif4 coding downstream 417844 44735181 ~ 44772738 (-)
XLOC_019884 skp1 coding upstream 131694 45341786 ~ 45349548 (-)
XLOC_019885 PPP2CA coding upstream 141568 45351660 ~ 45363956 (-)
XLOC_019886 cdkn2aipnl coding upstream 167119 45377211 ~ 45382195 (-)
XLOC_019887 NA coding upstream 281135 45491227 ~ 45492856 (-)
XLOC_019888 LO018363.2 coding upstream 371893 45581985 ~ 45588720 (-)
XLOC_019876 CU855912.1 non-coding downstream 622316 44568180 ~ 44568266 (-)
XLOC_019872 NA non-coding downstream 1032812 44157073 ~ 44157770 (-)
XLOC_019891 NA non-coding upstream 477843 45687935 ~ 45709745 (-)
XLOC_019893 NA non-coding upstream 620949 45831041 ~ 45837230 (-)

Expression


Co-expression Network