G4119


Basic Information

Item Value
gene id G4119
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 5329270 ~ 5329629 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU5341
GACAtagaaactacctctaacttccttcatactggacaccgaGACATAGAAACTACCTCTCTTTCATACTGGACACCGAGACATAGAAACTACCTCTGACTTTCTTTCAAACTGGACACCGAGACAtagaaactacctctaactttaTTTCATACTGGACACCGAGACAtagaaactacctctaacttccttcatactggacaccgagacagagaaactacctctaacttccttcatactggacaccgaGACATAGAAACTACCTCTCTTTCATACTGGACACCGAGACAtagaaactacctctaactttctTCATACTGGACACCGAGACATAGAAACTACCTctgacttccttcatac

Function

NR:

description
PREDICTED: shematrin-like protein 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5341 True 360 lncRNA 0.46 1 5329270 5329629

Neighbor

gene id symbol gene type direction distance location
agxta LOC105025628 coding upstream 372184 4948727 ~ 4957086 (+)
im:7152348 LOC106573986 coding upstream 1476261 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 1481311 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 1481576 3847623 ~ 3847694 (+)
LOC118965227 NA coding upstream 1503405 3822517 ~ 3826226 (+)
LOC110526525 LOC106613452 coding downstream 334542 5664171 ~ 5767693 (+)
LOC110527749 armc9 coding downstream 1229438 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 1354470 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 1698921 7028550 ~ 7056518 (+)
alpi.2 LOC106574193 coding downstream 1734739 7064368 ~ 7094220 (+)
G4066 NA non-coding upstream 15512 5313531 ~ 5313758 (+)
G4065 NA non-coding upstream 18476 5310555 ~ 5310794 (+)
G4062 NA non-coding upstream 28182 5300846 ~ 5301088 (+)
G4057 NA non-coding upstream 36680 5292367 ~ 5292590 (+)
G4039 NA non-coding upstream 65385 5263534 ~ 5263885 (+)
G4129 NA non-coding downstream 20841 5350470 ~ 5351002 (+)
G4139 NA non-coding downstream 30351 5359980 ~ 5360236 (+)
G4142 NA non-coding downstream 33785 5363414 ~ 5363772 (+)
G4150 NA non-coding downstream 45254 5374883 ~ 5375125 (+)
G4163 NA non-coding downstream 62192 5391821 ~ 5392089 (+)
G3597 NA other upstream 472205 4856525 ~ 4857065 (+)
G3596 NA other upstream 473022 4854521 ~ 4856248 (+)
G3351 NA other upstream 887362 4439966 ~ 4441908 (+)
G3234 NA other upstream 929826 4398904 ~ 4399444 (+)
G3176 NA other upstream 1151197 4175323 ~ 4178073 (+)
G5276 NA other downstream 1187853 6517482 ~ 6518189 (+)
G5581 NA other downstream 1481365 6810994 ~ 6811621 (+)
G6434 NA other downstream 2395417 7725046 ~ 7725609 (+)
G6518 NA other downstream 2555762 7885391 ~ 7885907 (+)
G6807 NA other downstream 2706988 8036617 ~ 8037154 (+)

Expression


Co-expression Network