G4129



Basic Information


Item Value
gene id G4129
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 5350470 ~ 5351002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU5352
gttctacagggtcagtagtatgataggtgttgttctacagggtcagtcatagtagtatgataggtgttgttctacagggtcagtcatagtagtatgataggtgttgttttacagggtcagtcatagtagtatgataggtgttgttctacagggtcagccatagtagtatgataggtgttgttttacagggtcagtcatagtagtatgataggtgttgttctacagggtcagtcatagtagtatgataggtgttgttctacagggtcagccatagtagtatgataggtgttgttctacagggtcagccatagtagtatggtgTC
>TU5357
gttctacagggtcagtagtatgataggtgttgttctacagggtcagtcatagtagtatgataggtgttgttctacagggtcagccatagtagtatgataggtgttgttctacagggtcagccatagtagtatgataggtgttgttctacaggatcagccatagtagtataataggtgttgttctacagggtcagccatagtagtatgataggtgttgttttacagggtcagtcatagtagtatgataggtgttgttctacagggtcagtcatagtagtatgataggtgttgttctacagggtcagccatagtagtatgataggtgttgttctacagggtcagccatagtagtatggtgTC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU5352 False 323 lncRNA 0.40 3 5350470 5351002
TU5357 True 360 lncRNA 0.45 2 5350470 5351002

Neighbor


gene id symbol gene type direction distance location
agxta LOC105025628 coding upstream 393384 4948727 ~ 4957086 (+)
im:7152348 LOC106573986 coding upstream 1497461 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 1502511 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 1502776 3847623 ~ 3847694 (+)
LOC118965227 NA coding upstream 1524605 3822517 ~ 3826226 (+)
LOC110526525 LOC106613452 coding downstream 313169 5664171 ~ 5767693 (+)
LOC110527749 armc9 coding downstream 1208065 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 1333097 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 1677548 7028550 ~ 7056518 (+)
alpi.2 LOC106574193 coding downstream 1713366 7064368 ~ 7094220 (+)
G4119 NA non-coding upstream 20841 5329270 ~ 5329629 (+)
G4066 NA non-coding upstream 36712 5313531 ~ 5313758 (+)
G4065 NA non-coding upstream 39676 5310555 ~ 5310794 (+)
G4062 NA non-coding upstream 49382 5300846 ~ 5301088 (+)
G4057 NA non-coding upstream 57880 5292367 ~ 5292590 (+)
G4139 NA non-coding downstream 8978 5359980 ~ 5360236 (+)
G4142 NA non-coding downstream 12412 5363414 ~ 5363772 (+)
G4150 NA non-coding downstream 23881 5374883 ~ 5375125 (+)
G4163 NA non-coding downstream 40819 5391821 ~ 5392089 (+)
G4190 NA non-coding downstream 63455 5414457 ~ 5414731 (+)
G3597 NA other upstream 493405 4856525 ~ 4857065 (+)
G3596 NA other upstream 494222 4854521 ~ 4856248 (+)
G3351 NA other upstream 908562 4439966 ~ 4441908 (+)
G3234 NA other upstream 951026 4398904 ~ 4399444 (+)
G3176 NA other upstream 1172397 4175323 ~ 4178073 (+)
G5276 NA other downstream 1166480 6517482 ~ 6518189 (+)
G5581 NA other downstream 1459992 6810994 ~ 6811621 (+)
G6434 NA other downstream 2374044 7725046 ~ 7725609 (+)
G6518 NA other downstream 2534389 7885391 ~ 7885907 (+)
G6807 NA other downstream 2685615 8036617 ~ 8037154 (+)

Expression



Co-expression Network