G4142


Basic Information

Item Value
gene id G4142
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 5363414 ~ 5363772 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU5377
GTCATGGCCGTTGCTGgaagaagaccaaggtgcagcgtggtgagggtacattttcctttttatttcaaaatgtcgccaacaaaactaCAAACgaaaaaacaaccgtgaagcttacagggcattagtgccacaaacaaagttaactacccacaacgaaaggagggaaaaagggctacctaagtatggttcccaatcagagacaacgatagacagctgtccttgattgagaaccatacccggccaaaacatagaaacacaaaatcatagaaaacaaatcaaagaatgcccaccccaaatcacaccctgaccaaaccaaatagagacataaaatactctctaaggtcagggcgtgacaatat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5377 True 359 lncRNA 0.53 1 5363414 5363772

Neighbor

gene id symbol gene type direction distance location
agxta LOC105025628 coding upstream 406328 4948727 ~ 4957086 (+)
im:7152348 LOC106573986 coding upstream 1510405 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 1515455 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 1515720 3847623 ~ 3847694 (+)
LOC118965227 NA coding upstream 1537549 3822517 ~ 3826226 (+)
LOC110526525 LOC106613452 coding downstream 300399 5664171 ~ 5767693 (+)
LOC110527749 armc9 coding downstream 1195295 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 1320327 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 1664778 7028550 ~ 7056518 (+)
alpi.2 LOC106574193 coding downstream 1700596 7064368 ~ 7094220 (+)
G4139 NA non-coding upstream 3178 5359980 ~ 5360236 (+)
G4129 NA non-coding upstream 12412 5350470 ~ 5351002 (+)
G4119 NA non-coding upstream 33785 5329270 ~ 5329629 (+)
G4066 NA non-coding upstream 49656 5313531 ~ 5313758 (+)
G4065 NA non-coding upstream 52620 5310555 ~ 5310794 (+)
G4150 NA non-coding downstream 11111 5374883 ~ 5375125 (+)
G4163 NA non-coding downstream 28049 5391821 ~ 5392089 (+)
G4190 NA non-coding downstream 50685 5414457 ~ 5414731 (+)
G4198 NA non-coding downstream 56033 5419805 ~ 5420109 (+)
G4209 NA non-coding downstream 67566 5431338 ~ 5435172 (+)
G3597 NA other upstream 506349 4856525 ~ 4857065 (+)
G3596 NA other upstream 507166 4854521 ~ 4856248 (+)
G3351 NA other upstream 921506 4439966 ~ 4441908 (+)
G3234 NA other upstream 963970 4398904 ~ 4399444 (+)
G3176 NA other upstream 1185341 4175323 ~ 4178073 (+)
G5276 NA other downstream 1153710 6517482 ~ 6518189 (+)
G5581 NA other downstream 1447222 6810994 ~ 6811621 (+)
G6434 NA other downstream 2361274 7725046 ~ 7725609 (+)
G6518 NA other downstream 2521619 7885391 ~ 7885907 (+)
G6807 NA other downstream 2672845 8036617 ~ 8037154 (+)

Expression


Co-expression Network