G4209


Basic Information

Item Value
gene id G4209
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 5431338 ~ 5435172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU5448
ttaaattacatgatcaaatgtgacatgttaaattacatgatcaaatgtggcatgttaaattacatgatcaaatgtggcatgttaaattacatgatcaaatgtggcatgttaaattacatgtaaacaaaacatgatcaaatgtggcatgttaaattacatgatcaaatgtgacatgttaaattacatgatcaaatgtgacatgttaaattacatgatcaaatgtgacattttaaattacatgatcaaatgtggcatgttaaattacatgtaaaaaaacatgatcaaatgtgacatgttaaattacatgatcaaatgtggcatgttaaattacatgatcaaatgtgacatgttaaattacatgatcaaatgtggcatgttaaa
>TU5449
ttaaattacatgatcaaatgtgacatgttaaattacatgatcaaatgtggcatgttaaattacatgatcaaatgtggcatgttaaattacatgatcaaatgtggcatgttaaattacatgatcaaatgtggcatgttaaattacatgatcaaatgtggcatgttaaattacatgatcaaatgtggcatgttaaattacatgatcaaatgtgacatgttaaattacatgatcaaatgtgacatgttaaattacatgt
>TU5450
gttaaattacatgatcaaatgtgacatgttaaattacatgtaaacaaaacatgatcaaatgtggcatgttaaattacatgtaaacaaaacatgatcaaatgtggcatgttaaattacatgatcaaatgtgacatgttaaattacatgatcaaatgtgacatgttaaattacatgatcaaatgtgacattttaaattacatgatcaaatgtggcatgttaaattacatgtaaaaaaacatgatcaaatgtgacatgttaaattacatgatcaaatgtggcatgttaaattacatgatcaaatgtgacatgttaaattacatgatcaaatgtggcatgttaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5448 False 381 lncRNA 0.45 3 5431338 5433302
TU5449 False 256 lncRNA 0.38 3 5431338 5435172
TU5450 True 341 lncRNA 0.36 2 5431983 5433302

Neighbor

gene id symbol gene type direction distance location
agxta LOC105025628 coding upstream 474252 4948727 ~ 4957086 (+)
im:7152348 LOC106573986 coding upstream 1578329 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 1583379 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 1583644 3847623 ~ 3847694 (+)
LOC118965227 NA coding upstream 1605473 3822517 ~ 3826226 (+)
LOC110526525 LOC106613452 coding downstream 228999 5664171 ~ 5767693 (+)
LOC110527749 armc9 coding downstream 1123895 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 1248927 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 1593378 7028550 ~ 7056518 (+)
alpi.2 LOC106574193 coding downstream 1629196 7064368 ~ 7094220 (+)
G4198 NA non-coding upstream 11229 5419805 ~ 5420109 (+)
G4190 NA non-coding upstream 16607 5414457 ~ 5414731 (+)
G4163 NA non-coding upstream 39249 5391821 ~ 5392089 (+)
G4150 NA non-coding upstream 56213 5374883 ~ 5375125 (+)
G4142 NA non-coding upstream 67566 5363414 ~ 5363772 (+)
G4225 NA non-coding downstream 15104 5450276 ~ 5450476 (+)
G4234 NA non-coding downstream 23862 5459034 ~ 5459441 (+)
G4238 NA non-coding downstream 26257 5461429 ~ 5461628 (+)
G4258 NA non-coding downstream 41371 5476543 ~ 5476993 (+)
G4320 NA non-coding downstream 116971 5552143 ~ 5606891 (+)
G3597 NA other upstream 574273 4856525 ~ 4857065 (+)
G3596 NA other upstream 575090 4854521 ~ 4856248 (+)
G3351 NA other upstream 989430 4439966 ~ 4441908 (+)
G3234 NA other upstream 1031894 4398904 ~ 4399444 (+)
G3176 NA other upstream 1253265 4175323 ~ 4178073 (+)
G5276 NA other downstream 1082310 6517482 ~ 6518189 (+)
G5581 NA other downstream 1375822 6810994 ~ 6811621 (+)
G6434 NA other downstream 2289874 7725046 ~ 7725609 (+)
G6518 NA other downstream 2450219 7885391 ~ 7885907 (+)
G6807 NA other downstream 2601445 8036617 ~ 8037154 (+)

Expression


Co-expression Network