G4928


Basic Information

Item Value
gene id G4928
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6182768 ~ 6187774 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU6282
gccagagcccggacttgaacccgatcgaacatctctggagagacttgaaactagctgggcggtgatgctccccatccaacttgacaaagcttgagaggatatgcagagaagaatgggagaaactccccaaatacagtggTGCCAAGCtagtaaagtaacaaaatgtgtaatcgggggtctgaacactttccgaatgcactgtaggtagggttaaagtaactaggcaacaggatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagataatagacagtatcaacagtatactgtaggtagggttaaagtaactaggcaacaggatagataatagacagtatcaacagtatactgtaggtagggttaaagtaactaggcaacaggatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaacAGGATAGACAatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtagggatgaagtagctaggcaacaggatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtagggttaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtagtggtaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagatgatagacagtatcaacagcatgtgatgagtcaaaacgggtcaatgcagatagttaaataaTTAACCAAATAGCTGCCCAGACTAATTATTTAGGAGCCTTATTGGTTGGAGATAGAATCTGtttaggg
>TU6283
caacagtatactgtaggtagggttaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtagtggtaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtagggatgaaGTAGCTAGGCAACAAGATAGATGatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagataatagacagtatcaacagtatactg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6282 False 1954 lncRNA 0.38 4 6182768 6187774
TU6283 True 257 lncRNA 0.49 2 6183810 6185167

Neighbor

gene id symbol gene type direction distance location
LOC110526525 LOC106613452 coding upstream 415075 5664171 ~ 5767693 (+)
agxta LOC105025628 coding upstream 1225682 4948727 ~ 4957086 (+)
im:7152348 LOC106573986 coding upstream 2329759 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 2334809 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 2335074 3847623 ~ 3847694 (+)
LOC110527749 armc9 coding downstream 371293 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 496325 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 840776 7028550 ~ 7056518 (+)
alpi.2 LOC106574193 coding downstream 876594 7064368 ~ 7094220 (+)
ankle1 LOC106574192 coding downstream 908525 7096299 ~ 7107509 (+)
G4836 NA non-coding upstream 110261 6072297 ~ 6072507 (+)
G4620 NA non-coding upstream 288504 5894044 ~ 5894264 (+)
G4612 NA non-coding upstream 293987 5888362 ~ 5888781 (+)
G4596 NA non-coding upstream 316195 5866357 ~ 5866573 (+)
G4485 NA non-coding upstream 367637 5814903 ~ 5815131 (+)
G5049 NA non-coding downstream 113509 6301283 ~ 6301808 (+)
G5125 NA non-coding downstream 167847 6355621 ~ 6356004 (+)
G5146 NA non-coding downstream 182126 6369900 ~ 6370385 (+)
G5149 NA non-coding downstream 183526 6371300 ~ 6371709 (+)
G5169 NA non-coding downstream 218111 6405885 ~ 6406131 (+)
G3597 NA other upstream 1325703 4856525 ~ 4857065 (+)
G3596 NA other upstream 1326520 4854521 ~ 4856248 (+)
G3351 NA other upstream 1740860 4439966 ~ 4441908 (+)
G3234 NA other upstream 1783324 4398904 ~ 4399444 (+)
G3176 NA other upstream 2004695 4175323 ~ 4178073 (+)
G5276 NA other downstream 329708 6517482 ~ 6518189 (+)
G5581 NA other downstream 623220 6810994 ~ 6811621 (+)
G6434 NA other downstream 1537272 7725046 ~ 7725609 (+)
G6518 NA other downstream 1697617 7885391 ~ 7885907 (+)
G6807 NA other downstream 1848843 8036617 ~ 8037154 (+)

Expression


Co-expression Network