G5149


Basic Information

Item Value
gene id G5149
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6371300 ~ 6371709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU6513
gtacgggcttccttcttttcactctgacaATTcagttagtattgtgaagtaactacaatgttgttgatcaatgctcagttttctcccatctgatttaaagtcaccattgtcttcatggtgaaatcccagagcggtttccttcctctccggcaactgagttaggaaggacgcctgtatttttgtattgacttggtgtattgatacaccatccaaagtgtaaataataacttccccatgctcaaagggactgtcaatgtctgttttttttttatttttacccatctaccaataggtgtccttctttgtgaggcattggaaaacctccctggtctttgtggttgaatctgtgtttgatattcactgctcgactgagggaccttacagataattgtatgtgtggggttcagaga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6513 True 410 lncRNA 0.39 1 6371300 6371709

Neighbor

gene id symbol gene type direction distance location
LOC110526525 LOC106613452 coding upstream 603607 5664171 ~ 5767693 (+)
agxta LOC105025628 coding upstream 1414214 4948727 ~ 4957086 (+)
im:7152348 LOC106573986 coding upstream 2518291 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 2523341 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 2523606 3847623 ~ 3847694 (+)
LOC110527749 armc9 coding downstream 187358 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 312390 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 656841 7028550 ~ 7056518 (+)
alpi.2 LOC106574193 coding downstream 692659 7064368 ~ 7094220 (+)
ankle1 LOC106574192 coding downstream 724590 7096299 ~ 7107509 (+)
G5146 NA non-coding upstream 915 6369900 ~ 6370385 (+)
G5125 NA non-coding upstream 15296 6355621 ~ 6356004 (+)
G5049 NA non-coding upstream 69492 6301283 ~ 6301808 (+)
G4928 NA non-coding upstream 183526 6182768 ~ 6187774 (+)
G4836 NA non-coding upstream 298793 6072297 ~ 6072507 (+)
G5169 NA non-coding downstream 34176 6405885 ~ 6406131 (+)
G5180 NA non-coding downstream 49199 6420908 ~ 6421250 (+)
G5183 NA non-coding downstream 50615 6422324 ~ 6422546 (+)
G5203 NA non-coding downstream 62382 6434091 ~ 6434294 (+)
G5204 NA non-coding downstream 65242 6436951 ~ 6438837 (+)
G3597 NA other upstream 1514235 4856525 ~ 4857065 (+)
G3596 NA other upstream 1515052 4854521 ~ 4856248 (+)
G3351 NA other upstream 1929392 4439966 ~ 4441908 (+)
G3234 NA other upstream 1971856 4398904 ~ 4399444 (+)
G3176 NA other upstream 2193227 4175323 ~ 4178073 (+)
G5276 NA other downstream 145773 6517482 ~ 6518189 (+)
G5581 NA other downstream 439285 6810994 ~ 6811621 (+)
G6434 NA other downstream 1353337 7725046 ~ 7725609 (+)
G6518 NA other downstream 1513682 7885391 ~ 7885907 (+)
G6807 NA other downstream 1664908 8036617 ~ 8037154 (+)

Expression


Co-expression Network