G5486


Basic Information

Item Value
gene id G5486
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6650192 ~ 6651768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU6894
ACGTATACAAAGATATGACAATTCATTGCTACTGTGTCAAAATACATTATCACACAAATGCAGCTACATATTACAGAAATACTGTACAGTGAAGCATCGGTGAAACTGTGGAAATGTTAAATGTCACCCGGATTCAAGTAGCCTACGTTATGTGATTGATTTTATACGCGAATAAAACCTCATAATGTACAGATGATTATCTACAGTCTAATGTACACTAACTAGCCTGACAGATGATTATCTACAGTCTAATGTACACTAGCCTGACAGATGATTGTCTACAGTCTAATGTACACTAGCCTGACAGATGATTATCTACAGTCTAATCTACACTAGCCTGACAGAAGTACATCATCTTTGTGTCTTTCTTGTAAACACTATAATTTAACATAATGAAAAGTTCAATGAAAGCAGCTATTCAAAGTGAATTACGATAACAAATCAAAGCAAAGCTGATATTCACTTAGTTGACATTTCCCTTCAAAGAGCTGAGCAACCAACAAACTATTTACAAGTCAAGAGACGATCCAGACCAGCGTAACAACTTGATTTTGATAAACACACAGACCCAAAAAAATTTAAATCCTGGTTTCTTTATGAGCATCCGTATAGAACGAAGGAAAAATTAATTCCTGGACAAAACAGAGACTTGTCCATAATGTGACGTGTATTGGTTGGTTGTAAAAATACTGTCTACAGCTGTTTTATGTAGTTCCTACGAAAGTATTAGTTAAGCATTTAAGTATAGGCTTAAAAGGATTAAGCGTTAAACTGGAGGGCTTTAAAGTTCAGATGGAAAGCAGGAGGGCAGAATCAGTCATTGAGCCACTGGATATGGATTAGGAAGGCCGAGTCAAAACCAAACAAAATCAAAACCTTTTAAACTGAAAAGGAAAAGGTGGCCAAAGTCCAGCTTTATTTCACCTGAGCatgttatataccctgtactACGTCCACCTCGTCACCGGAAACGGAGGGACGTTATAAGACACTgattacatgttttatttgttttactaTGTACTCACCACAGCGTTCGTCATAAATAGATGTCTGTAAAGGAGCCCTACTCCATTAACCATAGTGTTAGTCATAAATACTAAATAATTTCCTCCTTCCTCAATGGGTCACTCATTTAAAATTCCTAACAGTCAAGCGGAAAAGCAACATGGTGGAAGGAACCCTCGATCAACCCTTTCAACCATCTTTGATGAGACACAGCCTTTGGTTAGCAATAGTGCTACTACATTATAGCTGGTGATGTTCACGGTACCATAGATTTGGAATGAATGAATTTTGTCCAGTAGCTGGTTATGTAACGTCCAATGTGTTTAAGATGACATGGGAGAGCGAGTACTTTGGTGTTTATTCTCCAGGAGAGAGAGTTAAAAGAGAGAAATAGGTAAAGAGAAGAAAGCCTTGTCCAGCTGGTTAGGTAGGTAGGGCGTATTGTTGTTGTGCTTATTTGAGAGCAGTGTTGTGTTACCAAAGTGTTCTATACCGAGGTTTGAAAGGGGCCCCTCCCCGAGCTACAATCCTGCACATTGTTTCCTATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6894 True 1556 lncRNA 0.44 2 6650192 6651768

Neighbor

gene id symbol gene type direction distance location
polr2h polr2h coding downstream 93459 6554201 ~ 6556733 (-)
mfsd8l1 LOC106574194 coding downstream 98682 6537498 ~ 6551510 (-)
LOC118966178 NA coding downstream 663112 5985494 ~ 5987080 (-)
LOC110526196 LOC106574198 coding downstream 1606656 4996827 ~ 5043536 (-)
LOC110525986 LOC106574199 coding downstream 1662978 4963362 ~ 4987214 (-)
LOC110527966 NA coding upstream 87352 6739120 ~ 6742325 (-)
LOC118966759 NA coding upstream 87667 6739435 ~ 6739571 (-)
LOC118966757 NA coding upstream 88121 6739889 ~ 6739958 (-)
LOC118966754 NA coding upstream 88894 6740662 ~ 6740734 (-)
LOC118966761 NA coding upstream 89598 6741366 ~ 6741502 (-)
G5480 NA non-coding downstream 8769 6640814 ~ 6641423 (-)
G5473 NA non-coding downstream 20412 6626353 ~ 6629780 (-)
G5471 NA non-coding downstream 20698 6628834 ~ 6629494 (-)
G5468 NA non-coding downstream 22853 6622012 ~ 6627339 (-)
G5470 NA non-coding downstream 25114 6624660 ~ 6625078 (-)
G5532 NA non-coding upstream 81035 6732803 ~ 6733748 (-)
G5582 NA non-coding upstream 159313 6811081 ~ 6811481 (-)
G5599 NA non-coding upstream 178663 6830431 ~ 6830660 (-)
G5642 NA non-coding upstream 207040 6858808 ~ 6859079 (-)
G5681 NA non-coding upstream 239502 6891270 ~ 6894444 (-)
G4804 NA other downstream 632116 6016822 ~ 6018076 (-)
G3862 NA other downstream 1693120 4948683 ~ 4957072 (-)
LOC110486761 kif1a other downstream 1883053 4751406 ~ 4921256 (-)
G3291 NA other downstream 2386579 4253187 ~ 4263613 (-)
G5487 NA other upstream 88741 6740509 ~ 6750036 (-)
G6347 NA other upstream 862343 7514111 ~ 7517821 (-)
LOC110531419 LOC106574164 other upstream 1067140 7704811 ~ 7727531 (-)
G6706 NA other upstream 1232575 7884343 ~ 7885000 (-)
G6810 LOC107579696 other upstream 1387411 8039179 ~ 8039463 (-)

Expression


Co-expression Network