G5365 (ncl)


Basic Information

Item Value
gene id G5365
gene name ncl
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6742471 ~ 6747632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU6757
tttttaaaaaaaatcgcCACGTCGGTTTATTCAATTATCACACTTGTGAAAACCTTTACATTTTCAAACAGCAAGATTTAGTCAATGCACTACAAACAtcatatgatacatttttttgtgtatAACGTTATTCGAGGCCTCTCTAGTACCTCTCGACTTCTAAAGACATTTGACTGTACCCCACCCAAAACATGACAAAACACCGATTTACGAGATTCTAAACGCCCAACAGACACGGGCCGATTTAATCTTCCATCCATTACAATATGCCTCGCACATTTTACCGTTATACAGTCTCACCTAGAGCAAACTAGAACAAAacaaggatattaaaggatacagGACTTTCTTACAAAAAAAAAGgtaaaatgaaatacaaattgtTGAATGTACAATATGTACCTGACCAAACAGGGCTTTTTCACAGCAAACAGGGTTGCTAGACATTCCATTAACTCTTTTGGGGAAAAACAATAAACTCATGTGGATGATGCAGGAAGGACAATTCAAAACTGACAGGCAGCTCTCAAGCTGAGAGGGTGAAAAGGTTGGTGCAGGGGGCGCTAGAGAGCCCATTACAGTTATATATCAATGAAGCTTTCTGGAATGTCCAAAAGGCTCTGCCAGCGTATGGGTAACGGTGATGAAAACAGAGTCTTTTCAAAACAGTAAAATAGACAGGGATTTTAATCATCAAATTTGATCTTCTTGCCCTGGGGCTTGTCTCCGAATCCACCGCCTCTTCCacctagaaaaaaaaaaaagacagaaagTCACGGTCTGTTCCTTTGAAAGAAGCACATTAACACGAGGGTCTAAGTTAGGAGACTGCTTCAGCAGTTCAATGGACCAGATCAGTACCTACTATCTATGAGATTCATCACAAGATATCAGAGTGAAAAGTATCCATCATCTCTGGTCTACGCAACACAAGAGCCAAACTCTGAACCTTTACCTCTGAATCCACCACGTCCACCGCCGCGGTCACCTCCTCTGCCCCCCCTGAAGCCACCGCCACGTCCTCCCCTGCCACCGCCGAAACCACCGCCGCCGCCACGGCCGAATCCACCACCGCGACCTCCCCTGCCACCGCCGCCGAAGCCTCCGCGACCCCCACGGAATCCACCGCTGTCGCCCTTGGGCTTGGCGTAGTCCAGGTTCACGCTGCTGCCGTCAATTTCGCCGCCCTCCATGGCCTCTTTGGCCGCCTTACAGTCGCTCTCGCTGTCAAAGTCGACAAATCCAAAGCTTTAGAGTTGCCCGTGTCACGGTCCGTCACCACTCTGGCCCCAGTGGCACTGTCGAAGGCATCTCTGAGTGACTGGTCTGTGGTGTCTCCAGAAAGCCCTCTGACAAACAGGGTTTTTGTGGGACCTCCGGATCCTCCTCTGCCTCCGGCGTCTCTGCTTCCACTGTTCTGGCTGTACTCTAGCCGGATTTGCCTGCCCTCAATCTCTGTTCCATTAAGGTTGTCCAGCGCCTCCTTGGCTGCCTCTGCACTCTCAAACTCCACAAAAGCAAACCCTTTGGGCCTGCCGTTGTTCTGTGGTACCCTGATGGAAACAGCCCCCTCGAATGCACTCTGAAGGGAGTCTTCTGTAGCACTGTAGGACAGGTTGTTAACGATGAGGGTCTTGCTTTCAGCCGCTGCCTGAGCTGGTGGTCTGCCTCCCTTCTGGCTCTTGATGCCTGTGTAGTCGACCATGATCGAGCGTCCCTGGACATCGGCACCCTGGGCCTCTGTTAGCATCTTGTCCGCCATGGCCTCAGTCTTGAACGCAATGTAGGCAATGCCTCTATTGGAACCGTCCTGGCCTGGGGGTATCCTGATTTCAACAGCATCCGCAAACACTTCCTTCAAGTCGTCTTCCGTGGCCGAGAAGGGCAGGTTTTTCACAAATAAGGTCCGCGCGTCCCTATCTTCTTCTCCTCCTGGGAGTTTCCTTTGCTACGGGCCTTGTCCATCTTCAACTCCTGTCCCATGCACTTCTTGCCGTTCAGCTCCATGGCCGTCTGCATGTCCTCCGCTGAGGCAAATTCTACGTAGCCAAACTTCCTGGTGCGCAAGACAATGTGCATTAGAAGACTGCATATAAAGCCCATCAACTAGGCTTCATTGTCTTTTTCAAGTGTGCCAGCGATTGAGGATAGGACCAGCAGACGATAACACACACTGGTACCGAAGACATAGCACTGGCTTTATTCTACCTCCGTACAATCACACGTGAGTACTGAGCaactacaggtgtgccaagaaaTGGAGGGAATCATGGTCAATAAAGTAAAATCAACTACCCTCTCCCATCAAGAACACCAGTTGTGTCTGGCCAATTGAAAAGTGGGAACGATCAGAAGTCCTGGGTGGAGCATCATAACATAGGAATCCACCGTCACTTACTTTGATGCGCCAAGTCTGACGTCCTGAACTTCAAGGTTCTTCTTTGAGAAGAAAGCTGCCAGGGCTTCTTTGATTTCATCAAAGTCCTTGTTTGAGTTCAGGTTGCCGATAAATAGACAGAACGTATCTGAGGGGGGAAAACTATCAATTAGGTTACGCTTTAAATGATCGTCATCAACGGCAACCTACGAACACCGTCAGAATAACATGAAGGTGACATCAAATGAGTCAGTATTAAGTCCCTTGTTGTTCATCATGCGTATTATGGTTCAGTGTTGGAGCAGGTGTTGAAAGGGCTGAATGTAAGGCATTTACCATCACTTTCGGACTTGGCCTTCTTGGCAGGCGGGGTCTCCTTTTTGTTGTCGGCCTTCCTCTTTGCAGGAGTCGCTGGGGCCTCATCTTCATCCTCCTCGTCATCATCTTCCTCCTCGTCATCATCTTCTTCGTCATCATCCTCATCGTCGTCAGACTCCTCCTTAGCCTTGACCATGCCTGCTTTCTTTGCTGCGGGTGCCGGGGTGGTATCCATCTCCTCTTCCTCAGAGTCTGGAAGGCACGAGAGGTGGCTTTAGTCTCGCTAGACCCAAACCATCAACTACAGACCATTTACTGACCAGGG

Function

symbol description
ncl Predicted to enable mRNA binding activity. Acts upstream of or within heart looping; rRNA processing; and rRNA transcription. Predicted to be located in nucleolus. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Is expressed in cardiac ventricle. Orthologous to human NCL (nucleolin).

NR:

description
nucleolin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6757 True 3020 lncRNA 0.42 8 6742471 6747632

Neighbor

gene id symbol gene type direction distance location
b3gnt7 b3gnt7 coding upstream 42167 6684099 ~ 6700304 (+)
LOC110527749 armc9 coding upstream 90676 6559067 ~ 6651795 (+)
LOC110526525 LOC106613452 coding upstream 974778 5664171 ~ 5767693 (+)
agxta LOC105025628 coding upstream 1785385 4948727 ~ 4957086 (+)
im:7152348 LOC106573986 coding upstream 2889462 3848517 ~ 3853009 (+)
alpi.1 LOC106574189 coding downstream 280918 7028550 ~ 7056518 (+)
alpi.2 LOC106574193 coding downstream 316736 7064368 ~ 7094220 (+)
ankle1 LOC106574192 coding downstream 348667 7096299 ~ 7107509 (+)
LOC118966183 NA coding downstream 582820 7330452 ~ 7331042 (+)
LOC110528450 LOC106574163 coding downstream 666981 7414613 ~ 7550394 (+)
G5324 NA non-coding upstream 112692 6623804 ~ 6629779 (+)
G5304 NA non-coding upstream 162698 6578604 ~ 6579773 (+)
G5273 NA non-coding upstream 226728 6515106 ~ 6515743 (+)
G5266 NA non-coding upstream 232344 6509927 ~ 6510127 (+)
G5366 NA non-coding downstream 695 6748327 ~ 6748866 (+)
G5567 NA non-coding downstream 45124 6792756 ~ 6809277 (+)
G5580 NA non-coding downstream 62412 6810044 ~ 6810274 (+)
G5583 NA non-coding downstream 64876 6812508 ~ 6812775 (+)
G5669 NA non-coding downstream 138630 6886262 ~ 6886485 (+)
G5276 NA other upstream 224282 6517482 ~ 6518189 (+)
G3597 NA other upstream 1885406 4856525 ~ 4857065 (+)
G3596 NA other upstream 1886223 4854521 ~ 4856248 (+)
G3351 NA other upstream 2300563 4439966 ~ 4441908 (+)
G3234 NA other upstream 2343027 4398904 ~ 4399444 (+)
G5581 NA other downstream 63362 6810994 ~ 6811621 (+)
G6434 NA other downstream 977414 7725046 ~ 7725609 (+)
G6518 NA other downstream 1137759 7885391 ~ 7885907 (+)
G6807 NA other downstream 1288985 8036617 ~ 8037154 (+)
LOC110501328 LOC106574178 other downstream 1481665 8229189 ~ 8231566 (+)

Expression


Co-expression Network