G5681



Basic Information


Item Value
gene id G5681
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6891270 ~ 6894444 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU7097
gtcacgccctgaccatagtttactttgtattttctatgttttgattggtcagggtgtgatctgagtgggcattctatgtttcatgtcttgtttgtctatttctatgttcagcctgatatggttctcagtcagaggcaggtgttcgtcattgtctctgattgggaaccatatttaggtagcctgggtttcactgtgtgtttgtgggtgattgttcctgtctatgtgtttttcaccagataggctgttttaggttttcgttacgttcatcacgttctttatttttgtagtgtttgcattgattcgtgttttacgtttgttcattaaaacatggatcgtaaaccacacgctgcattttggtccgactctccttctcacgaagaaaaccgttacactaacAAACAATTAATTGGGCCATTAATTTGCCATTGTGTCATAACATGCAATTTTCACCAAACATTACATGTACGATGAAGCATTATGATGTACATGATGGACTGCAAAATCTCTCATAACCCACTTTGTGTTATGACCCATTCAAGTAAAGATGCCTTGGAGAACCTTTTGGGTTGTCACACCTTTTTGTCACACCTTTTTGTCACACCTTTTTCAGTTGAAAAAAAAGGTTATTGGATGAACCCCTCGTGTAAAGGTTCAAAC

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU7097 True 657 lncRNA 0.40 2 6891270 6894444

Neighbor


gene id symbol gene type direction distance location
LOC110528129 nppc coding downstream 111391 6774389 ~ 6779879 (-)
LOC110528054 NA coding downstream 130722 6757914 ~ 6760548 (-)
LOC118966762 NA coding downstream 143139 6748011 ~ 6748131 (-)
LOC118966755 NA coding downstream 143560 6747638 ~ 6747710 (-)
LOC118966756 NA coding downstream 144415 6746783 ~ 6746855 (-)
LOC110531419 LOC106574164 coding upstream 810367 7704811 ~ 7727531 (-)
ddx59 ddx59 coding upstream 835149 7729593 ~ 7739189 (-)
dynlt2b tctex1d2 coding upstream 1245724 8140168 ~ 8147503 (-)
LOC118965595 NA coding upstream 1282837 8177281 ~ 8182131 (-)
LOC110529671 rubcn coding upstream 1380194 8274638 ~ 8341087 (-)
G5642 NA non-coding downstream 32191 6858808 ~ 6859079 (-)
G5599 NA non-coding downstream 60610 6830431 ~ 6830660 (-)
G5582 NA non-coding downstream 79789 6811081 ~ 6811481 (-)
G5532 NA non-coding downstream 157522 6732803 ~ 6733748 (-)
G5486 NA non-coding downstream 239502 6650192 ~ 6651768 (-)
G5775 NA non-coding upstream 72323 6966767 ~ 6966988 (-)
G5787 NA non-coding upstream 81777 6976221 ~ 6976664 (-)
G6074 NA non-coding upstream 89480 6983924 ~ 7033530 (-)
G6083 NA non-coding upstream 100386 6994830 ~ 6995099 (-)
G6085 NA non-coding upstream 117791 7012235 ~ 7012970 (-)
G5487 NA other downstream 141234 6740509 ~ 6750036 (-)
mfsd8l1 LOC106574194 other downstream 339924 6537498 ~ 6551510 (-)
G4804 NA other downstream 873194 6016822 ~ 6018076 (-)
G3862 NA other downstream 1934198 4948683 ~ 4957072 (-)
LOC110486761 kif1a other downstream 2124131 4751406 ~ 4921256 (-)
G6347 NA other upstream 619667 7514111 ~ 7517821 (-)
G6706 NA other upstream 989899 7884343 ~ 7885000 (-)
G6810 LOC107579696 other upstream 1144735 8039179 ~ 8039463 (-)
G7184 LOC100135997 other upstream 1269832 8164276 ~ 8183933 (-)

Expression



Co-expression Network