G5780



Basic Information


Item Value
gene id G5780
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6969540 ~ 6969874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU7199
atgctaattagtgtagttgatgacaattatcttggatccgggatgggtagttctaagTTAACAAGGTAGAGCATCACTTTATAATTAACAGAcgccccatcttagctactgctgcatcaatatgttttgaccatgacagtttacaatctattgttactccaagcagtttagtcatctcaacttgctcaatttccacattatttattacaagatttagttgaggtttagggtttagtgagtgttttgttccaaatacaatgtttTAGTTTTAGacatatttagggctaacttattcctttccacccactctgaaactaactgcagctctttgtaag

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU7199 True 335 lncRNA 0.36 1 6969540 6969874

Neighbor


gene id symbol gene type direction distance location
b3gnt7 b3gnt7 coding upstream 269236 6684099 ~ 6700304 (+)
LOC110527749 armc9 coding upstream 317745 6559067 ~ 6651795 (+)
LOC110526525 LOC106613452 coding upstream 1201847 5664171 ~ 5767693 (+)
agxta LOC105025628 coding upstream 2012454 4948727 ~ 4957086 (+)
im:7152348 LOC106573986 coding upstream 3116531 3848517 ~ 3853009 (+)
alpi.1 LOC106574189 coding downstream 58676 7028550 ~ 7056518 (+)
alpi.2 LOC106574193 coding downstream 94494 7064368 ~ 7094220 (+)
ankle1 LOC106574192 coding downstream 126425 7096299 ~ 7107509 (+)
LOC118966183 NA coding downstream 360578 7330452 ~ 7331042 (+)
LOC110528450 LOC106574163 coding downstream 444739 7414613 ~ 7550394 (+)
G5774 NA non-coding upstream 2556 6966770 ~ 6966984 (+)
G5713 NA non-coding upstream 45545 6923751 ~ 6923995 (+)
G5712 NA non-coding upstream 46893 6922273 ~ 6922647 (+)
G5705 NA non-coding upstream 52827 6916452 ~ 6916713 (+)
G5669 NA non-coding upstream 83055 6886262 ~ 6886485 (+)
G5786 NA non-coding downstream 6375 6976249 ~ 6976667 (+)
G5815 NA non-coding downstream 42215 7012089 ~ 7013653 (+)
G5822 NA non-coding downstream 62110 7031984 ~ 7084536 (+)
G5820 NA non-coding downstream 88267 7058141 ~ 7062174 (+)
G5846 NA non-coding downstream 138234 7108108 ~ 7108385 (+)
G5581 NA other upstream 157919 6810994 ~ 6811621 (+)
G5276 NA other upstream 451351 6517482 ~ 6518189 (+)
G3597 NA other upstream 2112475 4856525 ~ 4857065 (+)
G3596 NA other upstream 2113292 4854521 ~ 4856248 (+)
G3351 NA other upstream 2527632 4439966 ~ 4441908 (+)
G6434 NA other downstream 755172 7725046 ~ 7725609 (+)
G6518 NA other downstream 915517 7885391 ~ 7885907 (+)
G6807 NA other downstream 1066743 8036617 ~ 8037154 (+)
LOC110501328 LOC106574178 other downstream 1259423 8229189 ~ 8231566 (+)
LOC110505168 LOC106574179 other downstream 1285268 8255142 ~ 8271732 (+)

Expression



Co-expression Network