G5820


Basic Information

Item Value
gene id G5820
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 7058141 ~ 7062174 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU7244
tctggatctgtttgttctccctctctctctggatcagtttgttctccctctttctctggatctgtttgttctccctctctctctggatcggtttgttctccctctctctctggatctgtttgttctccctctctctctggatcggtttgttctccctctctctctggatcggtttgttctccctctctctctggatcggtttgttctccctctctctctggatctgtttgttctccctctttctctggatcggtttgttctccctctctctctggatcggtttgttctccctctttctctggatcagtttgttctccctctctctctggatctgtttgttctccctctttctctggatctgtttgttctccctctttctctggatcagtttgttctccctctctctctggatctgtttcttgtccctctctctctggatctgtttgttctccctctctctctggatctgtttgttctacctctctctctggatctgtttgttctccctctctctctggatctgtttgttctccctctctctctggatctgtttgttctccctctctctctggatcggtttgttctccctctctctctggatcggtttgttctccctctctctctggatctgtttgttctccctctttctctggatcggtttgttctccctctctctctggatctgtttgttctccctctctctctggatcagtttgttctccctctctctctggatcggtttgttctccctctctctctagatcggtttgttctccctctctctctggatctgtttgttctccctctctctctggatcggtttgttctccctctctctctggatctgtttgttctccctctctctctggatcggtttgttctccctctctctctggatctgtttgttctccctctctctctggatctgtttcttgtccctctttctctgggcATGCTTGTCCTCTTTCACTTACACAGCTTACATGTTGATCTCTGCCTTTCACAGAAACCTCTCTTTCTGCATGACCCTTTAAGATATCATGAACATCATTTATTTATGCCTAACAAAGGTAAGATATATGCTGTACAAATTTAACTGAATGCTTAAACATCTACTTGCTTTTTTTCTAATCACTAACCATCAGACATGCTCCCTCAGCCCTGACAGCCTCCAGCTTCTTTCCCTCATTCTTGTCTGCTGTGTTTTGACATGTATTGTTATTAAACTCACATAGACAATAACTCAAGGCTTAATAGGTGATGAATCAGTTTAAGTTTTAATTTGTTTGTTTGAACTGGTAAAATCTTCATTTCTCTCAGGattggccttcgtcagagctgtTGGCACTGCCTCTCTTGAAGAATGTCCGTATATCCATCTAACGTTAGTCAATAGCTAGCCTGCAGTTGAAAAAACTGAGGATAATACAATGACATTGTGATCAACACTATGTCACCTTTTCTACACATGACCTTATCATTGTTTTACAATGGCCTTACTGAATGAAAACAATTGAGTATGAAAAGATATGTGCATGATTTTACGTCATCTGtctcatttatagcctggcacagattgcaaaactacattaaatacaacgttaactagatatcatCGCCACATAACTTATGTCGCGTTTAAAAGACACCGTTACCGTTAGGTAGCTCGTAACGTCTGTTACACTGTAACTTACAGGCAGCCTCACTTAAACACGTATTGGTTAACAACGCTTTGATTATGACCAAAGTCTATAATAgtgaatactctctctctctctgttctacctTACCACAAATTCACATCGTAGCCTATCTGCATGAATCCGTCCTGTCAGAGCCTTTTCCTGTCAGTTTCCTGTTAGCTAGCAGTCTCAAGCCACAGCAGTAACGTTAACCAAAATGTTAGATACAAGTAGACCTAACTGTCACCAACGTGTGCAGCAGCCTCCCCCAGGTCCTAGTGCCTGCCCAGTAAGCAGTTTAAGATGCGATGGAACGGTTGACgaaaaaaaaagaaatcacaGAGAAAATATTTTGACTGATATATTGATTTATTTAGGGGGGGGGCTAACGACGTCCCCGGGTCCCAGAAATAACATTTAGTGTCGTTTtattagataaaatccttctttatatctcaAAAAGTCTGTTTGGTTGGCGCCATTGATTTTAGTAATCCACGTGTTCAacttgcaaagaaaggaatccgaaaatctacccctaaactttgtttcaaccagtcaaaatatgtttctatttactcctcagatacccttaaatgtaatcaaactatagtATTTCTTACGGAAATAAGTAATAGGAAAGGTGCGTCTTGTCTTCTTGGTCGTGCGCAAACACggatttccaagactgtgtccctgtactaaaactgttATTTCTTAATTGTTTTTCAAATTACAAGCCTGAACCCTCGAACATAGACTACTGACACCAAGTAGAAGCCGTAGAAATTGCATCTTGGGAGCTTGAATTGAGTATGCCCTTATACTGGCCATTGGAAGAGCATGGTCTCTCAAAAAAACTACATTTCCGGGTGGTTTTTCATTGGATTTTCTCTTACCATATCTATTATGTTATACTTGCCTACATTATTGTAACATTTATACGAACTTccaagtgttttctttccaatggtaccaattatatgcatatcctggcttcagggcctgagtaacaagcagtttactttgggcacgtcattcagacaggaagtggagaaagaaGGAGCCTTTTGATGTTAAGCCTAGTCCGGACTAAAAAGAATGTTCCATATGCTTCTTAGACAAGTGCTAGGCTTAATACGTGTCTGGGGAACGGAAAATACAGCTCATTCTAATTTCATCAGTCTTTTTACCCTGTTATTGCTTAGATCCCTTGGCTTGGCCAATGGTCAAAGGAAGTCAAAGgttgttctgttgttgttctGAGAACATTTAGGATGAAATGCTCCCACTGACCTGTATTATGGACACAGTTTAGAAGTAAACAGGAAGTTAACTGTCATTTAGCAAATGTTTAAATGGTGTATTTTGACCTTTTTGTTACCAGATCAATTGTCTTCCTCAGATTGTACCTCATATTAGCATTATAatcttgtttttgttgttgattttgaAAACGAATGTTTTTTTTGTATGAAGACGTTGTATTTTTACACATTTGTAGAAATTTGTTTTGAATAtctccaaaaataaaaataaatttgttGATTTGCTCTCCTTCCTCCTTGAACCCAACTCACTGTACAATGGAAAGGtcagttatactactgtaccaaGATATGTATGATATATGAAACCTTCAAAAATA

Function

NR:

description
putative protein in rps4-rps11 intergenic region

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU7244 True 3330 lncRNA 0.43 2 7058141 7062174

Neighbor

gene id symbol gene type direction distance location
alpi.1 LOC106574189 coding upstream 1623 7028550 ~ 7056518 (+)
b3gnt7 b3gnt7 coding upstream 357837 6684099 ~ 6700304 (+)
LOC110527749 armc9 coding upstream 406346 6559067 ~ 6651795 (+)
LOC110526525 LOC106613452 coding upstream 1290448 5664171 ~ 5767693 (+)
agxta LOC105025628 coding upstream 2101055 4948727 ~ 4957086 (+)
alpi.2 LOC106574193 coding downstream 2194 7064368 ~ 7094220 (+)
ankle1 LOC106574192 coding downstream 34125 7096299 ~ 7107509 (+)
LOC118966183 NA coding downstream 268278 7330452 ~ 7331042 (+)
LOC110528450 LOC106574163 coding downstream 352439 7414613 ~ 7550394 (+)
LOC110528753 LOC106574165 coding downstream 679388 7741562 ~ 7839951 (+)
G5815 NA non-coding upstream 44488 7012089 ~ 7013653 (+)
G5786 NA non-coding upstream 81474 6976249 ~ 6976667 (+)
G5780 NA non-coding upstream 88267 6969540 ~ 6969874 (+)
G5774 NA non-coding upstream 91157 6966770 ~ 6966984 (+)
G5713 NA non-coding upstream 134146 6923751 ~ 6923995 (+)
G5846 NA non-coding downstream 45934 7108108 ~ 7108385 (+)
G5847 NA non-coding downstream 47554 7109728 ~ 7109940 (+)
G5849 NA non-coding downstream 49346 7111520 ~ 7192013 (+)
G5867 NA non-coding downstream 77367 7139541 ~ 7140409 (+)
G5868 NA non-coding downstream 78388 7140562 ~ 7141294 (+)
G5581 NA other upstream 246520 6810994 ~ 6811621 (+)
G5276 NA other upstream 539952 6517482 ~ 6518189 (+)
G3597 NA other upstream 2201076 4856525 ~ 4857065 (+)
G3596 NA other upstream 2201893 4854521 ~ 4856248 (+)
G3351 NA other upstream 2616233 4439966 ~ 4441908 (+)
G6434 NA other downstream 662872 7725046 ~ 7725609 (+)
G6518 NA other downstream 823217 7885391 ~ 7885907 (+)
G6807 NA other downstream 974443 8036617 ~ 8037154 (+)
LOC110501328 LOC106574178 other downstream 1167123 8229189 ~ 8231566 (+)
LOC110505168 LOC106574179 other downstream 1192968 8255142 ~ 8271732 (+)

Expression


Co-expression Network