G6123 (LOC106574193)


Basic Information

Item Value
gene id G6123
gene name LOC106574193
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 7093170 ~ 7094398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU7607
tgtcattttatATTCCAAAATATATTAATTTAAAAACAGGACCTCATTTGTTGTCCACGGTATTGCGTTTCATAGTAGATTTACTGACTGAAGTCATAGCCGTTTATCTTTTCCTTACAATAGTCATGTTACTAACTATGACAATAAAATGGTTAACAAGCATTAACTTCTTCAAGAATTATTGTTTCCTACCCaaaaaaatgtcattttatttGAAATGAATTAGACTAATCGCAAGTACATTTGGATAAGTTTTATGGAGTGTCAATGGAGATTATACAGTAGATCAGCTCAGTTTACACAACGCCATTACTATCCATAACCCTTTCCATTTCCTAAATAACAAACATTACTATCCATACCCCATTCCTAAATAACAAACATTACTATCCATACCCCATTCCCTTTCCTAAATAACAAACATTACTATCCATCCCCCATTCCCTTTCCTAAATAACAAACATTACTATCCATACCCCTTTCCTAAATAACAAACATTACTATCCATACCCCTTTCCTAAATAACAAACATTACTATCCATCCCTTtataacaaacaaacatgggTTGAACATGATTACCCATATCTTAATTGAACATTAGCAATGCCAACAAATAAGGTATATCAATATTGCAGGACAGAAGAGCTATCCGAGGGTTGCTATTGGTCCCGTGTaggtcagttggtagagcgtgacgcttgcaacgccagggttgtgggttcgatttccCCATGGGGGGGGGGACCAGTACAAAGATGGATGTAGTCACTCCTGTAAGaaaatctgctaaatgactcaaatgtaaaatgtctGTGTGGTGGAATATCGGCTAAATCTCAGTAGATTAATCATAGCTGGGTCTCTAAATGTTTCCAAAATCAGACAGATATAACGGAGAGGAGGGCAGGTATGAGGCCCATCAGACAgcgaagagggagaggagggcaggtATGAGGCCCATCAGCAGCACTATGAGGCTGGGGTTGGTGGCTCCTGTGTGGCTAGGCTCTGGCTCTAGGTCTGGGATGAAGCAGTCTGTGTAGGGCTCAATGCATGCTGCGTAGGCCATGACGTGGGCGATGTAGCTCTGCTCCTGGACCCCGTGAAAGAGGTGAGCCATGGGGCCCTTGGCAAAGATGGCCACGTCCTCTGAGCCGTGGGTCTCAGAGTCCAGAGGCACGGCTGACTGCTGCTTGTAATCTTTGTG
>TU7609
tgtcattttatATTCCAAAATATATTAATTTAAAAACAGGACCTCATTTGTTGTCCACGGTATTGCGTTTCATAGTAGATTTACTGACTGAAGTCATAGCCGTTTATCTTTTCCTTACAATAGTCATGTTACTAACTATGACAATAAAATGGTTAACAAGCATTAACTTCTTCAAGAATTATTGTTTCCTACCCaaaaaaatgtcattttatttGAAATGAATTAGACTAATCGCAAGTACATTTGGATAAGTTTTATGGAGTGTCAATGGAGATTATACAGTAGATCAGCTCAGTTTACACAACGCCATTACTATCCATAACCCTTTCCATTTCCTAAATAACAAACATTACTATCCATACCCCATTCCCTTTCCTAAATAACAAACATTACTATCCATACCCCTTTCCTAAATAACAAACATTACTATCCATACCCCTTTCCTAAATAACAAACATTACTATCCATCCCTTtataacaaacaaacatgggTTGAACATGATTACCCATATCTTAATTGAACATTAGCAATGCCAACAAATAAGGTATATCAATATTGCAGGACAGAAGAGCTATCCGAGGGTTGCTATTGGTCCCGTGTaggtcagttggtagagcgtgacgcttgcaacgccagggttgtgggttcgatttccCCATGGGGGGGGGGACCAGTACAAAGATGGATGTAGTCACTCCTGTAAGaaaatctgctaaatgactcaaatgtaaaatgtctGTGTGGTGGAATATCGGCTAAATCTCAGTAGATTAATCATAGCTGGGTCTCTAAATGTTTCCAAAATCAGACAGATATAACGGAGAGGAGGGCAGGTATGAGGCCCATCAGAGGGAGAAGAGTGCaggtATGAGGCCCATCAGCAGCACTATGAGGCTGGGGTTGGTGGCTCCTGTGTGGCTAGGCTCTGGCTCTAGGTCTGGGATGAAGCAGTCTGTGTAGGGCTCAATGCATGCTGCGTAGGCCATGACGTGGGCGATGTAGCTCTGCTCCTGGACCCCGTGAAAGAGGTGAGCCATGGGGCCCTTGGCAAAGATGGCCACGTCCTCTGAGCCGTGGGTCTCAGAGTCCAGAGGCACGGCTGACTGCTGCTTGTAATCTTTGTG
>TU7610
tgtcattttatATTCCAAAATATATTAATTTAAAAACAGGACCTCATTTGTTGTCCACGGTATTGCGTTTCATAGTAGATTTACTGACTGAAGTCATAGCCGTTTATCTTTTCCTTACAATAGTCATGTTACTAACTATGACAATAAAATGGTTAACAAGCATTAACTTCTTCAAGAATTATTGTTTCCTACCCaaaaaaatgtcattttatttGAAATGAATTAGACTAATCGCAAGTACATTTGGATAAGTTTTATGGAGTGTCAATGGAGATTATACAGTAGATCAGCTCAGTTTACACAACGCCATTACTATCCATAACCCTTTCCATTTCCTAAATAACAAACATTACTATCCATACCCCATTCCCTTTCCTAAATAACAAACATTACTATCCATACCCCTTTCCTAAATAACAAACATTACTATCCATCCCTTtataacaaacaaacatgggTTGAACATGATTACCCATATCTTAATTGAACATTAGCAATGCCAACAAATAAGGTATATCAATATTGCAGGACAGAAGAGCTATCCGAGGGTTGCTATTGGTCCCGTGTaggtcagttggtagagcgtgacgcttgcaacgccagggttgtgggttcgatttccCCATGGGGGGGGGGACCAGTACAAAGATGGATGTAGTCACTCCTGTAAGaaaatctgctaaatgactcaaatgtaaaatgtctGTGTGGTGGAATATCGGCTAAATCTCAGTAGATTAATCATAGCTGGGTCTCTAAATGTTTCCAAAATCAGACAGATATAACGGAGAGGAGGGCAGGTATGAGGCCCATCAGAGGGAGAAGAGTGCaggtATGAGGCCCATCAGCAGCACTATGAGGCTGGGGTTGGTGGCTCCTGTGTGGCTAGGCTCTGGCTCTAGGTCTGGGATGAAGCAGTCTGTGTAGGGCTCAATGCATGCTGCGTAGGCCATGACGTGGGCGATGTAGCTCTGCTCCTGGACCCCGTGAAAGAGGTGAGCCATGGGGCCCTTGGCAAAGATGGCCACGTCCTCTGAGCCGTGGGTCTCAGAGTCCAGAGGCACGGCTGACTGCTGCTTGTAATCTTTGTG

Function

NR:

description
intestinal-type alkaline phosphatase-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7607 False 1208 lncRNA 0.37 2 7093170 7094398
TU7609 False 1125 lncRNA 0.46 3 7093170 7094398
TU7610 True 1091 lncRNA 0.37 3 7093170 7094398

Neighbor

gene id symbol gene type direction distance location
LOC110528129 nppc coding downstream 313291 6774389 ~ 6779879 (-)
LOC110528054 NA coding downstream 332622 6757914 ~ 6760548 (-)
LOC118966762 NA coding downstream 345039 6748011 ~ 6748131 (-)
LOC118966755 NA coding downstream 345460 6747638 ~ 6747710 (-)
LOC118966756 NA coding downstream 346315 6746783 ~ 6746855 (-)
LOC110531419 LOC106574164 coding upstream 610413 7704811 ~ 7727531 (-)
ddx59 ddx59 coding upstream 635195 7729593 ~ 7739189 (-)
dynlt2b tctex1d2 coding upstream 1045770 8140168 ~ 8147503 (-)
LOC118965595 NA coding upstream 1082883 8177281 ~ 8182131 (-)
LOC110529671 rubcn coding upstream 1180240 8274638 ~ 8341087 (-)
G6099 NA non-coding downstream 7798 7032696 ~ 7085372 (-)
G6074 NA non-coding downstream 59640 6983924 ~ 7033530 (-)
G6085 NA non-coding downstream 80200 7012235 ~ 7012970 (-)
G6083 NA non-coding downstream 98071 6994830 ~ 6995099 (-)
G5787 NA non-coding downstream 116506 6976221 ~ 6976664 (-)
G6124 NA non-coding upstream 1254 7095652 ~ 7095961 (-)
G6132 NA non-coding upstream 11299 7105697 ~ 7107496 (-)
G6134 NA non-coding upstream 15213 7109611 ~ 7110005 (-)
G6133 NA non-coding upstream 17884 7112282 ~ 7112561 (-)
G6138 NA non-coding upstream 18755 7113153 ~ 7161382 (-)
G5487 NA other downstream 343134 6740509 ~ 6750036 (-)
mfsd8l1 LOC106574194 other downstream 541824 6537498 ~ 6551510 (-)
G4804 NA other downstream 1075094 6016822 ~ 6018076 (-)
G3862 NA other downstream 2136098 4948683 ~ 4957072 (-)
LOC110486761 kif1a other downstream 2326031 4751406 ~ 4921256 (-)
G6347 NA other upstream 419713 7514111 ~ 7517821 (-)
G6706 NA other upstream 789945 7884343 ~ 7885000 (-)
G6810 LOC107579696 other upstream 944781 8039179 ~ 8039463 (-)
G7184 LOC100135997 other upstream 1069878 8164276 ~ 8183933 (-)

Expression


Co-expression Network