XLOC_019903


Basic Information

Item Value
gene id XLOC_019903
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 53914 ~ 56740 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042003
CTTGGAAATGCTGTTTATTGTGAAAGTGCTTTATGAACACAACAGGAGCATGTGCCTAATATGAAACACTCTCGGTTTAGAATCATAAAGGTCTGTAATAAAGAGGTCATTTCTGGCATTAGAAGATTTTCATGATTTATTGTGATTAAAGGACATTACATAGGTGAAACTGTGGTTGTACGTGTTCCTGtgtggattgtgtgtgtgtgtgtgtttgatcagtTGTTGTGTTTCCATCCAAGGATGTGAATTAGATTTATGCGCAatactggaatattgcataaaatatttagattaaagagcccctgttatgTGTGTTTGAAGATGATCTTATTAGAGGGTTAGAGCGTTACATCTAAATGTgcgccatgtttaaaactattgattctttaacgaaagagtcgactcagagtcgaatgaatgaattgtgttgggttcggatcttttgcttgaacgtGTCGACGTCGATTCAACACATTAACAAATATGTAGTTCCGGTAATACGTGAACGCGCCTTTCTCTTTATTCATtcggctctcacatactctgtgtGCTACTACATAGCCGACCTACTGAAATTAAACTACATAAAAGACCAAGACCAAACGCAATGATTGTGGTGAATGCTGTAACTTTTGGAGGCGTGAGATGGGAgcacagacagatgctcaagactaTACAAgaataatactgaagcactgtgattaTGAACTGCAAACCatcattactgacacaaagaccctcacacacacatttatatctgcagactaacattactgacacaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccaacattaataacacaaagaccctcacacacacatttatatctgcacaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccatcattactgacacaaagaccctcacacacacatttatatctgcagaccaacattaataacacaaagaccctcacacacacatttatatctgcacaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcacaccaacattaatgacgcaaagaccctcacacacacatttatatctgcagaccaacattaatgactcaaagaccctcacacacacatttatatctgcagaccaacattaatgactcaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcacaccaacattttcacaaagaccctcacacacacatttatatcttcAGACCAACATTGTCAcaaagactcacacacacacatttatatctgcagaccaacattaatgacgcaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccaacattaatgactcaaagaccctcacacacacatttatatctgcagaccaacattaatgactcaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatcttcACACCAACATTttcacaaagaccctcacacacacatttatatctgcacaccaacattttcacaaagaccctcacacacacatttatatcttcAGACCAACATTGTCACAaagactctcacacacacatttatatcttcAGACCAACATTGTCACAaagactctcacacacacacacatttattagcATCTGTCAAACACTAAATCACACAGACTGATGAGTTTACTTACTACAGCTGTATACAGCAGAGTTTATTCCTTATCAGACAAATGTTTATCCAAGTCTAATCGTTTTTAATGTGTATTTCCATTAATA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042003 True 2297 lncRNA 0.38 2 53914 56740

Neighbor

gene id symbol gene type direction distance location
XLOC_019901 NA coding upstream 26070 24421 ~ 27844 (+)
XLOC_019900 mfap2 coding upstream 29639 22888 ~ 24275 (+)
XLOC_019899 sdhb coding upstream 35690 11395 ~ 18224 (+)
XLOC_019904 CABZ01085137.1 coding downstream 3524 60264 ~ 84423 (+)
XLOC_019905 zgc:112334 coding downstream 25059 81799 ~ 89987 (+)
XLOC_019906 nckipsd coding downstream 37952 94692 ~ 102265 (+)
XLOC_019907 slc25a20 coding downstream 48636 105376 ~ 109686 (+)
XLOC_019908 prkar2ab coding downstream 53418 110158 ~ 130695 (+)
XLOC_019909 NA non-coding downstream 162427 219167 ~ 287189 (+)
XLOC_019910 NA non-coding downstream 183428 240168 ~ 309204 (+)
XLOC_019924 NA non-coding downstream 754860 811600 ~ 817627 (+)
XLOC_019927 NA non-coding downstream 866771 923511 ~ 938827 (+)
XLOC_019938 CU570769.1 non-coding downstream 1193048 1249788 ~ 1267820 (+)

Expression


Co-expression Network