G6978


Basic Information

Item Value
gene id G6978
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8263650 ~ 8263921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU8603
acacaatccatgcctcaatgatccttctttaacctgtctcttccccgacatctacactgattgaaatggatttaacaagtgacatcaacaagggataataggtcagtctatgtcaaggaaagagcagatgttcctaCAGCGCAGTGGTACAGCGGTCTATAAGaccctgcatctcagtactacagaccctggttccattccaggctgtatcacagcagtctaagacactgcatctcagtactacagaccctggttccattccaggctgtatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8603 True 272 lncRNA 0.34 1 8263650 8263921

Neighbor

gene id symbol gene type direction distance location
LOC110501328 LOC106574178 coding upstream 32084 8229189 ~ 8231566 (+)
LOC118943893 LOC106574176 coding upstream 38383 8224365 ~ 8225267 (+)
LOC110497697 LOC106574176 coding upstream 49763 8209333 ~ 8213887 (+)
LOC110529566 LOC106574176 coding upstream 63984 8192682 ~ 8199666 (+)
LOC110529481 LOC106574173 coding upstream 72422 8187929 ~ 8191228 (+)
LOC110529807 pfn2 coding downstream 222733 8486654 ~ 8494344 (+)
LOC110515166 ankub1 coding downstream 338804 8602725 ~ 8612667 (+)
LOC110532690 NA coding downstream 360965 8624886 ~ 8634174 (+)
LOC110519734 ankub1 coding downstream 403248 8667169 ~ 8693760 (+)
LOC118936489 ankub1 coding downstream 457649 8721570 ~ 8747704 (+)
G6969 NA non-coding upstream 10980 8252462 ~ 8252670 (+)
G6967 NA non-coding upstream 14466 8243283 ~ 8249184 (+)
G6964 NA non-coding upstream 22926 8240435 ~ 8240724 (+)
G6946 LOC106574176 non-coding upstream 38582 8209462 ~ 8225068 (+)
LOC100135997 LOC100135997 non-coding upstream 66631 8117910 ~ 8197019 (+)
G6983 NA non-coding downstream 9015 8272936 ~ 8274241 (+)
G6985 NA non-coding downstream 10745 8274666 ~ 8275427 (+)
G7001 NA non-coding downstream 41844 8305765 ~ 8306401 (+)
G7009 tsc22d2 non-coding downstream 107253 8371174 ~ 8373438 (+)
G7066 NA non-coding downstream 162312 8426233 ~ 8426444 (+)
LOC110505168 LOC106574179 other upstream 7772 8255142 ~ 8271732 (+)
G6807 NA other upstream 226496 8036617 ~ 8037154 (+)
G6518 NA other upstream 377743 7885391 ~ 7885907 (+)
G6434 NA other upstream 538041 7725046 ~ 7725609 (+)
LOC118966784 LOC106574127 other downstream 1195027 9450932 ~ 9460358 (+)
LOC110510920 LOC106574155 other downstream 1719854 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 1877323 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 3212743 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 4974692 13238613 ~ 13295452 (+)

Expression


Co-expression Network