XLOC_019909


Basic Information

Item Value
gene id XLOC_019909
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 219167 ~ 287189 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042004
CCTGAGGCGATTTTACGAGATCACCGGCAGCCTCTGGACTATCGCGACCGAAATGGGAATATAGTGCAGAAAATATGAGTTATGCTCGGATTACCGTGACGGGCAGACTGTAGAGAGAGTCGAGAGAGCGTCCACACGACAGAAATCCAGATATTTGAAACATCAGAATGACCTGCTGCTGGAGTCTGTCTGCTGCGGGGTTCGAGCATCTGCAGCCCGGGTATGAGGACCTCCATCACACCACTGAACCAGGGAAATCATAAATATAGCACAGCATGGGCTGCTGTTTGTATTACGAGGATTAGGTCACTTATCCATACAAGCGGATGTGAAGACAACAGGGCAACCAACACTTCTGCTTGACCCGCTGGAGGTTGTCGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042004 True 382 lncRNA 0.50 4 219167 287189

Neighbor

gene id symbol gene type direction distance location
XLOC_019908 prkar2ab coding upstream 88472 110158 ~ 130695 (+)
XLOC_019907 slc25a20 coding upstream 109481 105376 ~ 109686 (+)
XLOC_019906 nckipsd coding upstream 116902 94692 ~ 102265 (+)
XLOC_019905 zgc:112334 coding upstream 129180 81799 ~ 89987 (+)
XLOC_019904 CABZ01085137.1 coding upstream 134744 60264 ~ 84423 (+)
XLOC_019911 btg2 coding downstream 49067 336256 ~ 339623 (+)
XLOC_019912 CU914780.1 coding downstream 57574 344763 ~ 355286 (+)
XLOC_019913 ora4 coding downstream 87289 374478 ~ 378236 (+)
XLOC_019914 capzb coding downstream 109651 396840 ~ 410544 (+)
XLOC_019915 celsr2 coding downstream 126160 413349 ~ 468437 (+)
XLOC_019902 NA non-coding upstream 158799 51545 ~ 60368 (+)
XLOC_019903 NA non-coding upstream 162427 53914 ~ 56740 (+)
XLOC_019901 NA non-coding upstream 191323 24421 ~ 27844 (+)
XLOC_019924 NA non-coding downstream 524411 811600 ~ 817627 (+)
XLOC_019927 NA non-coding downstream 636322 923511 ~ 938827 (+)
XLOC_019938 CU570769.1 non-coding downstream 962599 1249788 ~ 1267820 (+)
XLOC_019944 NA non-coding downstream 1029563 1316752 ~ 1364861 (+)
XLOC_019947 BX322657.1 non-coding downstream 1090142 1377331 ~ 1384069 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G378344 NA non-coding CI01000186 null 886922 ~ 942426 (+)