XLOC_019910


Basic Information

Item Value
gene id XLOC_019910
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 240168 ~ 309204 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042005
CGTCTCAGACACCCATATCTACAAGAATACTGCAGGAAAGTGTTGATTCTTTTGTTCTTCAACTGTTGTGTGTTTATTTGCTTGGTTGATGCAACAGACGACTCTATCATTTAGCAGGCTCTTTCATTCAGCAATGGGTGTGCAGGTGGGCTGTTCTTGCATTGATGGTTTTGTCTTGGCTGTTGTTGAGATTCAACATTAGGACACATCTGAACCGTCCAGGTCACCGGGTCTGTTTTCGGCAGGACAGAATCTTCCTGAAGATCCCAGCAGACCTTATAAGCTCTGGAAAATGTCTCACTCGCAGCATCATCCTTGACAGCTGTCTGCAGGCTCGAGGCTAGGAGACTTATAAAAATAGATGAAGGTTGTGGTCGTTTGTGTTTGATGGCGATGGCTGAGAGATTGTTTTCTCAGCTCACGTCCAGGGAAATTCCTGAGAGGTCCGTCTGCACAGAAATACAGTGCGGACCACAGGAGCGCCTCCTGTCCACCAGAGGTCTTTACTGCATCATGGAGATAATACGGGGCGGGGGTATTTTTGGTACTTTTCACACTGCCTCTTCATTCGTGTTAAACTGCCTGATATACTGAATATGGGCTGCAGTCTGAAATATTGATATGGCCTATAGTTTCTGCTCTGCATGtatgttgagctgctttgacacaatctacactgatAAAGAGCTGTAGAAGTATAGACGTGTGTCGATGCCTAAATGGGGCCTGAACTGATACATACAGAGCCAGTAAACTGACATCATATTATTCCTTAGGAAAGGACAGTATACACACGGTGTAACTGCAGGCTAATGATGCTTCTACACTACCCTGACTGTCATGTAATGATGTGGGCCTTTAGTGCCGCTGCTGTGGAACAGTATTGGTTGTGAAAGGTGCTGTACAAAGAATCTTCAATAGACATTGAACGGTTATTTGGTTGAAAACAGAaatctgaataataatatttagggATACTCCGATTGATCAGCCTATAATCACAGTTAATGACTCTTCATAAGGCTGATCTCATGAACTGATCACAGGTGTTTGTTTaggagtttacaagcagaggaagtcACTTGTGCTCCTGTATATTGGGCATAGCCTACAGCAGCCACAACACAGGAGAAGGTGAAGGTGTGTGGAGGCGAGAACGATCGATGCGCTCGCGTCATGGCAGCTAAAAAATATACAGATGCGGCACGACCTCTGTTTATATAGACTATTGGTGTGACTCacgtagggttgtcacgatactgaaatttGGAAAAGTcggtacagaaattttaaaagcATCCATTCGAGCGCTGTTGAGCGTATTCTTAGACagcactgattggccattgtgttcaggtgctcaacagaaatgactgcgaTTGGCCAttaaggtcatcagtttaccgaactcaccactgtttactgcatgtaaccacagatacagggacactggagcctTTCCGGTATACTGGTATAAATTCCAGAATCGTGGCAACAGTAGACTCGCGTGAGTGATGGTCTCTTTCTTGCAAGTGCAGCCATTGTATTTCCAGGGTTTTGATCTGCTGTGGTGCGAGCGGAGCGATTGATTGTAATATTTCCTATCAAATATtatgtgttatattattttctgtaaagatgCTTCTGGCCATGATAGGTTTCTCAAGGTCAATTGGTGAAGTCTGTTCCTCCACTGTCCTGCTTGGTTTGGGTCTTGTGTTTCTGttcatggatggatttgctcttcagtgtttggatgcTTGGCAGTGaagattaaaccacactgaactgatcttcagctctgaacactggactgacacagcttcAGTTCACTAGAACTTCAGTGTTCAGCTGCTGCCACACACTtgtaaatgttaaatacaaaaagAGATGTATTTAAGGGGTAATATGCAACatctttcatttattctcttGGGTAAGGGGAGATCTCCATGCATCATACTTAGCGGGAGAAagtgcttaatgcattataaagcttgaagcttCATAGTCAGTCCTCTGTATCACTCTGTAATCACCATGACAACGAGTcgactgcaaaaatcctgatcagagcatccctaataaatataaataaaatatctccAAGATGAGGACCGTAGGCTTTATGAGCACTGGACTCTGGAATATTCTCCATCAGAAGAGCATATTGTAGTGCTTTTCAGTCAGAAGGAAGACAGCAGAGGTCAGCGTGTGTTTTCTCCTCTGCCGTGATTTATATGTAAAGGAAAAGgCTTCTGTTAGAGGAGAATCTGCAGCCACTATTCTgaaataatttacaaataatttgaatgtaatgtgtaaaatggaAAAGTACATTTAATGCCTGCACTCCTAAATAAATCTGGGTTGTTTCAGCCCAAAGGTAGTCAGATATGGAGCAGCCAGTTTCAGCGTAGGGCCTATTACAAACACTCCTCTTTTTAAAAGGAAGTTAACAATAGGAGTGTACACCAACGCTCCAACCAAACGTAAACAAGTGAATAAGCCATTACAAATAGAATGACACCTACCTCCCTACGGCCCTCAAACACACAGAGAAGGGAAGTGGTTTCACGTGGCTTTACAAAAGATTGAAACATCAACGAGTTACCAGCAACATTACACTGGCACAAAGCAGGAGAGATGCAAAGCTCTGGAAGCAAGACAGCAGGTGCACTCAATCAACCTCCTCTCCTCCACACCTGGTATAGCGACAGTTCACAAACATGAGGAACAGCACACACAGAGCAACACGACTGAGCTTCACTCTGGAAAAGTGCATTGGGTCTGGCTGAATATTACAGGTACAGCTGCGCCGCAATGTCTGAGAACCTGTTCAAACAACATCTAAAGGACTGGCTTATAGCACATCAGACACTGTCGTCACTCTTAATAGCATCTAGCTAGCCCTAATCATGTTAGCACTTGTGCCTGCCATCCTAAGTGTGTGTTGTCTAAATAGGTTTTAACTGCTCTTGACTCCTTGACATATTGTGGGTGTATTAGTTCACTTGACATTGTTATTAGGGTTGAACTATGCCAGTTTAGTGCTTCTTAGATATGCTTGCTTCATTGTGGACTTTTTGCACTGCTGGTGCTAATCAATGTGCACGGTCTCTGCCTAATCAAGAAATAAATGACGTTATTAATTATTGTACATTTTGCTTCTGCACATCAGTTTTATGAAAACAATCGACACAATAGGAAGTGCTTTCTCTAATATAAAACAGTGTTAGTAACATGTCAAGTGTTTACATACAAAACCCCTCAAATAAGAACAAAACAACTGGAACCTTCTATCCTGAATTAAAAAGTTCATTTGTTTAGTGATGTGTAAATTCTTTGCAGGGGGCTGCATGAGTGGATCTGTCGCCCTCTACTGGATAAACATATATGTACGCTCAAATCACTTCCTACAACTCAAAGCCTTATTACTTTTCCTCCGACCAGCAGATGGCAGAATTCTGCCTTTAACACCCAGAACAGCATCCAGAATCAGCTCATGATTATTCAGTTTAGAATAGATTATTAGTGACTAGTGACAGATTTTAATTTGGGATATTACATATGGCTAAAtgcatgaattaaaaataaagatcatAAATAAAACCTCTGATGTTCACCATTCAAAAGGCACTGCAATATTTGTTCATGTGTTTAAAGTTTCTTATACTCAAAAAGGCTGAattggtttaataataataataaacagtaaacaatCCTCATAATTCGCTGATTGAGATTTTTGATTGAACCATCTGCAGCTCCTCTCGTGATGTTTCTGGGATCTGGTATGGTGTGAATTCATTCAGTCATGTGTGCTTTAAGGTGTGATGGCTGTCTATAACTGTTCCCACACTCATGTGAATATCTAGACTAGCCTTTCTTGTCAACCTCTCTCCACAAACAACGCAAACGGATCCCTCCATCAGCCCTGAAATACATGAAAGACTGTTTTGGTGgagttttattcatttagcaaACAATTTCTAAAGAGTAAGACACAATTTTTCAGATAGGTATCCTGTTTCTCTCTAATATTGTTCACACATTTGTCTAAAtttgcggtcacactgcactccTGTTTGCTCTGTAGACTCCCTTTCATTTGGAGTTTTGTTAGTCACTGCATCAATaaggttcaagcttggtaaactcagACCTGCTAAAAATCACAATAGATGATTGCGCGAGACCAACAGCAGATCAAAGATAACCGttctgtacagaaatgtaaaatataacgGAGCAATCGCTCTCTTCATGGATGTATAACCATCTTGTTTTATATCCTGCCCCTTTACATCCTGCCACCGGTAAATATTGATTCTGTCACGCTAAATATACAATTGTTTACGTTTATactttaaaatgctaataatattgagacTGCATCATGCCCCCTCAGTCAAACCTCATCAATGGtcacaaaataaacattatagagGAGGGCTGAAAAAAGACCTTTCTGGATCTGACGTCACAGGGACAGGCTACTGTTCACATATAACCgtttatgttagtaaatccaTATAAAGCACAGCTCTTCTTACAGTTTACAGCAGTCTTTGTTTCTGTACAATGtcaaaactgttttaaaacaaatgtttatgaATCTATAACTAGCTTTAATACAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042005 True 4640 lncRNA 0.41 4 240168 309204

Neighbor

gene id symbol gene type direction distance location
XLOC_019908 prkar2ab coding upstream 109473 110158 ~ 130695 (+)
XLOC_019907 slc25a20 coding upstream 130482 105376 ~ 109686 (+)
XLOC_019906 nckipsd coding upstream 137903 94692 ~ 102265 (+)
XLOC_019905 zgc:112334 coding upstream 150181 81799 ~ 89987 (+)
XLOC_019904 CABZ01085137.1 coding upstream 155745 60264 ~ 84423 (+)
XLOC_019911 btg2 coding downstream 27052 336256 ~ 339623 (+)
XLOC_019912 CU914780.1 coding downstream 35559 344763 ~ 355286 (+)
XLOC_019913 ora4 coding downstream 65274 374478 ~ 378236 (+)
XLOC_019914 capzb coding downstream 87636 396840 ~ 410544 (+)
XLOC_019915 celsr2 coding downstream 104145 413349 ~ 468437 (+)
XLOC_019902 NA non-coding upstream 179800 51545 ~ 60368 (+)
XLOC_019903 NA non-coding upstream 183428 53914 ~ 56740 (+)
XLOC_019901 NA non-coding upstream 212324 24421 ~ 27844 (+)
XLOC_019924 NA non-coding downstream 502396 811600 ~ 817627 (+)
XLOC_019927 NA non-coding downstream 614307 923511 ~ 938827 (+)
XLOC_019938 CU570769.1 non-coding downstream 940584 1249788 ~ 1267820 (+)
XLOC_019944 NA non-coding downstream 1007548 1316752 ~ 1364861 (+)
XLOC_019947 BX322657.1 non-coding downstream 1068127 1377331 ~ 1384069 (+)

Expression


Co-expression Network