G7313 (pfn2)


Basic Information

Item Value
gene id G7313
gene name pfn2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8486720 ~ 8494344 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU8997
TCTGGTtggaatttatttatttgatctgtctgtaaacaaggTGATAAATTAATTTATGGCATTTCTTGGTTTAGGCATATGAAGTGTTAAAGAGACTATCCCAAGTGTAAGAAAAGAAGTGTCAGGAAAGTCAGCAAATGAAGGTTTTaattagtacacacacacacacacaccccacaaggCCTGAACATTGGCActgatgcaaaaaaaaaaaaaaaaaagtgccaaTGAAATGACTCCTTCCTGGGCAGCTGTTAAAAATCCATCATACAATAGAAATTGATGTTTCAACATTATGGTACAGGATACACAGCTTTGGTATACAAGTTTCCACAAGACAATCAAAAGAGTTTTTATTCCAACCAATCCCGTCTCCCATTTCAATTGTGTAATTtctactttatatatatattctttttttttatttttttttttaaagttcttTTCAAATTGGACATTACATTTAAGTACAGAGCTTGAAAAGAAAGTTTGATACCATATCTTAGTTGAACACGAGTACAAGGCCATTTATTCCACAGTCGTTTCTTCACACAGCATGGGTTTAGAAATGCAGTAATTCATTTCTTTAATAAAAAATCTGAAGTTGTCAAATTATGACCGCTCGATTTCATCCACCGCAAACCCTCCCTCCCTTGTGCCTTCAACAGAAAGATGTGGTTTTACATTAGTGTTGTTTTGCCTTCAGCGGGAAAGATGAGGATAGAAGGCATCCTTCAATGATTTAGAGCAATTGTATATTTACCCAAAGCTGTCACTAAAATTGGTCCTATGAAAATGTCAAACTGGATGTATCTACTGTCCAAAATGGCagcctttaaaaaataaaacaaataaaggaAATGCATTACAGGAGCTGGCAAACAGTTTTAAGTGTCTACGCCATTGTAACGATGGAATGTCCATAATGGGGTTCATGTAGTCATGAAGAGGACATGGAAGAGATTCTGCCTGCATCCACCATGTCGGTTTTGCCTTCTGACTCAATCAATACCAGAACTGATAAGCCTGCCATGACTGCATTGAAGCACAACCCCCCCCCAATCCGGTAGAGTAGTGTGGctcagagagggagatacaggggacTTTAGGGTGTAGTGATTGGTTAATGGAGTGTTCCTCCCGTGTACTGATGTAGTGTCACCTATGGACAAAcaggaagagggggaaggagcTACAGATATTTGGCAGGAGTtacagggaggggacagagggaacAACAGTATTTCAGTAGCCTCAAAGATATGCAtgcgccccccccaaaaaaaataaacatgctCTAGAAAAGGAAGACAATGAGCTTGGTTACAGCTCAAGTGCTCCAAAGGCATCGGCTGCTCAAGAGAACTTCCGGGGCACCATCACACGAAATCTCAGTTCATCAATTTTAGGTTTCCTTCACTTTattcgtccccccccccccccccactgagcATTGGCCAGAATGGTGCAAGGGTGTTTTTTTTTAcggtttttttttttaacaagtatAGATTTGTCACAATGTCCTGTTAACAACAtgctcatttttttttttttttaactatggTGCAACAGTGCTAGAATGGGATTGAGTACACAGTGTGAATGCATCAAGATGACTGGGAAAGAACAAGAGAAAAGGGGAATcaaaccccccccaccccaaaaaaagggggggggacGACAAAAGGAGGGTCTGGGGAGAAAAGTAAGCAACTACCAACTAGAACTGGAAGTGTGTGTTATGGGTGAGCTGCTAGGTGGCTGGGCCGATGCTCCTTTAGTATCCAGACTTCCTCAGGTACTCGGCCATTGTATACGCTTTCTTGTTGAGCTGTCCTCCATGGACACCTTCCTTTCCCATGACTAAAACCAACGCTTTGCCGGCTTTGCCTATGGAAACGTTATATGTGGGCTCTCCTCCTTGACTCTTTGTCCTGATGTCCATTGTCCAGTCCCCGTCGGCGTGGAGGCTGTCTCTGATGACGGAGCATTTCTTTTGGCCTAGGGTCAGCCCACCGCAGAAGAAGGCTTCTCGGTCCTTTCCTACGATGATGTCGATTTCTTCAACCGTTATGTTAACAAATGTACCACCGGGAAACGATGCCCAGACATATTTGGAGTCCGTGTAACCAACAATGGCGGAGTCCTGGCAGCTGCCATCGGCCATCAGGTTATCCACGTAGCCTTGCCAGGACATACTTGCGTATTAGTTCaaatgtggaaatatatatagatttttttttaaatatatatatgtgaCAGGTACTCTAGAGCAACAGTGCCGGTTCTATAAGCTGTATTTTCTTTCGGTGATTTTGAAGTCTCCAACAATTCCCCGGCTCCGTCTCGTCCCGGCTGTCTTCTGGGTTTGGAC

Function

symbol description
pfn2 Enables ATP hydrolysis activity; actin monomer binding activity; and phosphatidylinositol-4,5-bisphosphate binding activity. Involved in several processes, including negative regulation of ruffle assembly; positive regulation of ATPase activity; and regulation of actin filament organization. Located in extracellular exosome.

NR:

description
profilin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8997 True 2377 lncRNA 0.38 3 8486720 8494344

Neighbor

gene id symbol gene type direction distance location
LOC110529747 tsc22d2 coding downstream 67670 8330314 ~ 8419050 (-)
LOC110529671 rubcn coding downstream 145633 8274638 ~ 8341087 (-)
LOC118965595 NA coding downstream 304589 8177281 ~ 8182131 (-)
dynlt2b tctex1d2 coding downstream 339217 8140168 ~ 8147503 (-)
ddx59 ddx59 coding downstream 747531 7729593 ~ 7739189 (-)
LOC110508833 rnf13 coding upstream 1581 8495925 ~ 8580590 (-)
LOC110530501 LOC106574127 coding upstream 124436 8618780 ~ 8666735 (-)
LOC118966038 LOC106574155 coding upstream 149652 8643996 ~ 8648869 (-)
LOC110515173 LOC106574127 coding upstream 163295 8657639 ~ 8665971 (-)
LOC110515722 LOC106574127 coding upstream 164009 8658353 ~ 8707910 (-)
G7327 NA non-coding downstream 33737 8446367 ~ 8452983 (-)
G7325 NA non-coding downstream 43377 8443144 ~ 8443343 (-)
G7321 NA non-coding downstream 47166 8439267 ~ 8439554 (-)
G7310 NA non-coding downstream 56005 8430511 ~ 8430715 (-)
G7303 NA non-coding downstream 64860 8421574 ~ 8421860 (-)
G7344 NA non-coding upstream 26965 8521309 ~ 8571227 (-)
G7357 NA non-coding upstream 47382 8541726 ~ 8542528 (-)
G7388 NA non-coding upstream 116027 8610371 ~ 8610799 (-)
G7390 NA non-coding upstream 116788 8611132 ~ 8611777 (-)
G7392 NA non-coding upstream 117618 8611962 ~ 8613086 (-)
G7184 LOC100135997 other downstream 302787 8164276 ~ 8183933 (-)
G6810 LOC107579696 other downstream 447257 8039179 ~ 8039463 (-)
G6706 NA other downstream 601720 7884343 ~ 7885000 (-)
LOC110531419 LOC106574164 other downstream 759189 7704811 ~ 7727531 (-)
G7985 NA other upstream 658926 9153270 ~ 9153947 (-)
G7965 NA other upstream 687111 9181455 ~ 9194911 (-)
G8455 LOC106574127 other upstream 1073597 9567941 ~ 9590586 (-)
G10263 NA other upstream 3068393 11562737 ~ 11563125 (-)
G10343 NA other upstream 3150736 11645080 ~ 11645703 (-)

Expression


Co-expression Network