G7827


Basic Information

Item Value
gene id G7827
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8933456 ~ 8938144 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU9601
gtgtataagagacttcaattacattgaacaGATTTATAAAGTGCTGTTCCTTCTTCTTcagtagtgtatttctgtattgttttagtgattcaccatagtgaaggtgttttgttttagtgattcaccatagtgaagGTGtactgttttagtgattcaccatagtgaaggtgtattgttttagtgattcaccatagtgaaggtgtattgttttagtgattcaccatagtgaaagtgtattgttttagtgattcaccatagtgaaggtgtattgttttagtgattcaccatagtgaaggcgtaggctctgGGGGTTGGATATATACTTTTTTAAATTcttagaagggattgaatttgttgttgcctatttGTTGTTGCCACtattttccttccatctataccATTTCTtcatattattcagttcctttggctttgat
>TU9602
ttgttatagagacaaaaagattggagaagtggttatccatacattttttttttttttttttccaattttcccagaagtggttagattcatggattcttcaattacattgaacaGATTTATAAAGTGCTGTTCCTTCTTCTTcagtagtgtatttctgtattgttttagtgattcaccatagtgaaggtgttttgttttagtgattcaccatagtgaagGTGtactgttttagtgattcaccatagtgaaggtgtattgttctagtgattcaccatagtgaaggtgtattgttttagtgattcaccatagtgaaggtgtattgttctagtgattcaccatagtgaaggtgtattgttttagtgattcaccttAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU9601 False 434 lncRNA 0.60 4 8933456 8938144
TU9602 True 373 lncRNA 0.49 2 8934335 8934739

Neighbor

gene id symbol gene type direction distance location
LOC110531731 LOC106613497 coding downstream 65561 8864188 ~ 8867895 (-)
LOC110514872 LOC106574127 coding downstream 73245 8852578 ~ 8860211 (-)
LOC118966084 LOC106574127 coding downstream 90406 8834722 ~ 8843050 (-)
LOC110529913 LOC106574127 coding downstream 108850 8811586 ~ 8824606 (-)
LOC118966096 LOC106574127 coding downstream 124552 8803089 ~ 8822710 (-)
LOC110531326 NA coding upstream 272352 9210496 ~ 9224400 (-)
htr2b htr2b coding upstream 317434 9255578 ~ 9273857 (-)
LOC110530621 LOC106574130 coding upstream 371209 9309353 ~ 9384061 (-)
ppp1r2 LOC106574129 coding upstream 453519 9391663 ~ 9425672 (-)
LOC118936718 ankub1 coding upstream 501543 9439687 ~ 9497588 (-)
pex5la LOC106574138 non-coding downstream 11527 8917868 ~ 9098569 (-)
G7820 NA non-coding downstream 15783 8912151 ~ 8917673 (-)
G7804 NA non-coding downstream 43215 8889375 ~ 8890241 (-)
G7794 NA non-coding downstream 55233 8875696 ~ 8878223 (-)
G7788 LOC106574141 non-coding downstream 62181 8868673 ~ 8871275 (-)
G7880 NA non-coding upstream 78314 9016458 ~ 9017666 (-)
G7887 NA non-coding upstream 86028 9024172 ~ 9092556 (-)
G7931 NA non-coding upstream 152432 9090576 ~ 9091604 (-)
G7975 NA non-coding upstream 196902 9135046 ~ 9135312 (-)
G7965 NA non-coding upstream 243311 9181455 ~ 9194911 (-)
LOC110529747 tsc22d2 other downstream 557892 8330314 ~ 8419050 (-)
G7184 LOC100135997 other downstream 749523 8164276 ~ 8183933 (-)
G6810 LOC107579696 other downstream 893993 8039179 ~ 8039463 (-)
G6706 NA other downstream 1048456 7884343 ~ 7885000 (-)
LOC110531419 LOC106574164 other downstream 1205925 7704811 ~ 7727531 (-)
G7985 NA other upstream 215126 9153270 ~ 9153947 (-)
G8455 LOC106574127 other upstream 629797 9567941 ~ 9590586 (-)
G10263 NA other upstream 2624593 11562737 ~ 11563125 (-)
G10343 NA other upstream 2706936 11645080 ~ 11645703 (-)

Expression


Co-expression Network