G8030


Basic Information

Item Value
gene id G8030
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9303092 ~ 9303588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU9835
CCTCAAACATGCCACAGGAAGTTGTAACAGCCTGTAGTCCCCAACTGACACGAGGAAATGTTTAGTCATACTCTGAGCCTCCCTTCTCCACCCTGTTTCCCAAAGGAGATGAGATGACCGCCCATGTTTCCCTTCCCGTATGTCTGTTCTATGCGGGTGGGATATTGTAGATTTCTGGGGGGAAAAAGTGGAAAATCTGAATTCCTGGAAGAACCTTGTAAATCTGAAATAGTTCACCTTGTCTTTGTTTATTTTGCCTCTGCTTTTCTCCTCTTCAACATGCCATCCTTGGCACTCACTTATCTGACCAAGTAATTTAACAGAGTAATGAGATGTTGGCACACGCACCCTTTCCATCATCAGCAGCATTGGTTCTTTATGACCCCAGTACTGACAAATGGAATAATTCTATAGGTAACCAACTCTAACCATGGCCTTATTCTGTGACCTGAACCTGTCATGTAACCTTAAATTCTAAAACACAAACTTGTCTTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU9835 True 497 lncRNA 0.43 1 9303092 9303588

Neighbor

gene id symbol gene type direction distance location
psmd1 psmd1 coding upstream 3027 9240119 ~ 9300065 (+)
LOC110531147 cssa16h2orf72 coding upstream 81684 9218658 ~ 9221408 (+)
LOC110531220 NA coding upstream 120010 9171968 ~ 9183082 (+)
usp13 LOC106574137 coding upstream 387692 8877591 ~ 8915400 (+)
ndufb5 LOC106574141 coding upstream 431808 8868110 ~ 8871284 (+)
LOC118966743 LOC106574127 coding downstream 124929 9428517 ~ 9436879 (+)
LOC118966784 LOC106574127 coding downstream 147344 9450932 ~ 9460358 (+)
LOC118966781 LOC106574155 coding downstream 160458 9464046 ~ 9471323 (+)
LOC118936726 LOC106574155 coding downstream 173100 9476688 ~ 9477259 (+)
LOC110510917 LOC106574155 coding downstream 177451 9481039 ~ 9483610 (+)
G8009 NA non-coding upstream 64859 9238004 ~ 9238233 (+)
G8000 NA non-coding upstream 71336 9231526 ~ 9231756 (+)
G7780 NA non-coding upstream 84598 9217219 ~ 9218494 (+)
G7776 NA non-coding upstream 107365 9195355 ~ 9195727 (+)
G7757 NA non-coding upstream 149249 9153538 ~ 9153843 (+)
G8031 NA non-coding downstream 374 9303962 ~ 9304110 (+)
G8032 NA non-coding downstream 8827 9312415 ~ 9315424 (+)
G8075 NA non-coding downstream 62888 9366476 ~ 9367099 (+)
G8142 NA non-coding downstream 213267 9516855 ~ 9557160 (+)
LOC110505168 LOC106574179 other upstream 1047214 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1072857 8229189 ~ 8231566 (+)
G6807 NA other upstream 1265938 8036617 ~ 8037154 (+)
G6518 NA other upstream 1417185 7885391 ~ 7885907 (+)
G6434 NA other upstream 1577483 7725046 ~ 7725609 (+)
LOC110510920 LOC106574155 other downstream 680187 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 837656 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 2173076 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 3935025 13238613 ~ 13295452 (+)

Expression


Co-expression Network