G8443


Basic Information

Item Value
gene id G8443
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9534591 ~ 9609835 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU10324
AAAGTACATTTTTGTCCTTTATGAATGTActgaagttgtcaaaaatataaatagttaaagtacagatacccccaaaacgatttaaatcatttttacttaagtactttgcaCCACTGAAAACAAACCTTTTCTAGTGTCTCTATATCACTGGCTTATCATCAcctagattgcccaccctagtcacaccctgacctaaccaaatagagaattaaaaagatctctacggtcagggcgtgacactttgcctgtttgatggttagtctgagggcatagcaggatttcatataagtgtctggattagtgtcccgctccttgaaagaagcagctctagcctttagcgcggtgtggatgttgcctgtaatccatggcttctgtcggggatatgtacatacggtcactgtggacaCGACGTTGTCGATCCACTTATTGATGTAGcctgtgactgaggtggtatactcctcaatgcatgTGGATGAATCGCAGAACATAttacagtctgtgctagcaaaacagtcaacATATGACAACAAATGAATGCAATCTCATTTAATGAGGAAAATTATCTTGGGTTGGAGAAGCTTCTAGTGATGGCTCTATACATTCTGGTGAAAAGGGAGGGTTTGCGACTCTTCTCTTCAGGTGGGAAGGAATATGCGATGTCATTTCCCTCTGGAGCAAAGGAGCCATGAGAATTTGTCCTCGACTCTGCAAAGAAAGACCATCCAGTATGTCATGGGTAACAATTCAGAGCAGAGTGCAATGTCTTTCCAAATGAATTAGTTGAACGCTAAAGTAATAATATCTTAGTCTTGAATGAGCAGCAGCAGGGCTTACCTGTAAAGTACACAGTAGGGGAAgtgttctgaggctggtactcCATAGACTTTTGAGGACAGTGGTTCTTTCTAACTTTCTTGGAACCCTGTTTGGTGGGAAAAGG

Function

NR:

description
uncharacterized protein LOC110506706

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10324 True 940 lncRNA 0.42 2 9534591 9609835
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118966297 ankub1 coding downstream 29246 9497513 ~ 9505345 (-)
LOC118936718 ankub1 coding downstream 37003 9439687 ~ 9497588 (-)
ppp1r2 LOC106574129 coding downstream 108919 9391663 ~ 9425672 (-)
LOC110530621 LOC106574130 coding downstream 150530 9309353 ~ 9384061 (-)
htr2b htr2b coding downstream 260734 9255578 ~ 9273857 (-)
LOC110511241 ankub1 coding upstream 38698 9648533 ~ 9696603 (-)
LOC110530072 ankub1 coding upstream 79147 9688982 ~ 9788702 (-)
LOC110518492 ankub1 coding upstream 179329 9789164 ~ 9811777 (-)
LOC110519733 ankub1 coding upstream 217452 9827287 ~ 9830366 (-)
LOC110514871 ankub1 coding upstream 223445 9833280 ~ 9894696 (-)
G8349 NA non-coding downstream 227348 9306992 ~ 9307243 (-)
G8347 NA non-coding downstream 228616 9305638 ~ 9305975 (-)
G8344 NA non-coding downstream 231883 9302469 ~ 9302708 (-)
G8011 NA non-coding downstream 295936 9238422 ~ 9238655 (-)
G7993 NA non-coding downstream 308706 9225514 ~ 9225885 (-)
G8479 LOC106574155 non-coding upstream 91429 9701264 ~ 9724238 (-)
G8532 NA non-coding upstream 300051 9909886 ~ 9931006 (-)
G8547 NA non-coding upstream 372383 9982218 ~ 9982559 (-)
G8574 NA non-coding upstream 433351 10043186 ~ 10043434 (-)
G7965 NA other downstream 351557 9181455 ~ 9194911 (-)
G7985 NA other downstream 380644 9153270 ~ 9153947 (-)
LOC110529747 tsc22d2 other downstream 1159027 8330314 ~ 8419050 (-)
G7184 LOC100135997 other downstream 1350658 8164276 ~ 8183933 (-)
G6810 LOC107579696 other downstream 1495128 8039179 ~ 8039463 (-)
G10263 NA other upstream 1952902 11562737 ~ 11563125 (-)
G10343 NA other upstream 2035245 11645080 ~ 11645703 (-)
G10776 NA other upstream 2245875 11855710 ~ 11856390 (-)
G10792 NA other upstream 2263270 11873105 ~ 11873891 (-)
LOC118938491 NA other upstream 2577069 12186901 ~ 12205391 (-)

Expression

G8443 Expression in all Baseline Samples

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G8443 Expression in each Bioproject

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G8443 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network