XLOC_019918 (pth4)


Basic Information

Item Value
gene id XLOC_019918
gene name pth4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 635813 ~ 637555 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039736
ATGTTGAAGATGCAGAGATCTCAGCAGCGCGTCGCTCTCATGATGCTGATGGTGGTCGCCGCCGTGCACTGCCAGGAGAGCGAGAGTAGGCGTGCGGTCACAGAGCACCAGCTGATGCATGACCGCGGTCGCTCCATTCAGAGTCTGAAGCGTCTGATCTGGCTGTCCAGCGCCATTGAGGGGCTTCACACTGCGCAGGCGCGAACACTGGAGCCcgacagcaggtggcgctctcgCGGGGCGCAGCTCTACTCTCAGCCCGGCAGAGAGGAGAGCAGCGGCGGCCAGAAGAGGGCGCTGGAGACGCTGCTCAGCGACCTGTACCGGGCACACCTGACGTTCGGCCTCGGAGAACCGGAGAAATAA

Function

symbol description
pth4 Predicted to enable hormone activity. Acts upstream of or within regulation of bone mineralization. Predicted to be located in extracellular region. Is expressed in diencephalon; dorsal periventricular hypothalamus; hypothalamus; and inferior lobe.

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0030500 regulation of bone mineralization biological_process
GO:0030282 bone mineralization biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-180611-1 Predicted to enable hormone activity. Acts upstream of or within regulation of bone mineralization. Predicted to be located in extracellular region. Is expressed in diencephalon; dorsal periventricular hypothalamus; hypothalamus; and inferior lobe.

Ensembl:

ensembl_id ENSDARG00000106914

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039736 True 366 mRNA 0.63 2 635813 637555

Neighbor

gene id symbol gene type direction distance location
XLOC_019917 med20 coding upstream 51203 558287 ~ 584610 (+)
XLOC_019916 nuak2 coding upstream 100359 508290 ~ 535454 (+)
XLOC_019915 celsr2 coding upstream 167376 413349 ~ 468437 (+)
XLOC_019914 capzb coding upstream 225269 396840 ~ 410544 (+)
XLOC_019913 ora4 coding upstream 257577 374478 ~ 378236 (+)
XLOC_019919 elf3 coding downstream 23950 661505 ~ 665371 (+)
XLOC_019920 gpr37l1a coding downstream 59376 696931 ~ 701105 (+)
XLOC_019921 zgc:162255 coding downstream 87084 724639 ~ 733339 (+)
XLOC_019922 znf76 coding downstream 99656 737211 ~ 753392 (+)
XLOC_019923 cry3b coding downstream 149001 786556 ~ 809282 (+)
XLOC_019910 NA non-coding upstream 326609 240168 ~ 309204 (+)
XLOC_019909 NA non-coding upstream 348624 219167 ~ 287189 (+)
XLOC_019902 NA non-coding upstream 575445 51545 ~ 60368 (+)
XLOC_019903 NA non-coding upstream 579073 53914 ~ 56740 (+)
XLOC_019901 NA non-coding upstream 607969 24421 ~ 27844 (+)
XLOC_019924 NA non-coding downstream 174045 811600 ~ 817627 (+)
XLOC_019927 NA non-coding downstream 285956 923511 ~ 938827 (+)
XLOC_019938 CU570769.1 non-coding downstream 612233 1249788 ~ 1267820 (+)
XLOC_019944 NA non-coding downstream 679197 1316752 ~ 1364861 (+)
XLOC_019947 BX322657.1 non-coding downstream 739776 1377331 ~ 1384069 (+)

Expression


Co-expression Network