G8253


Basic Information

Item Value
gene id G8253
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 10051041 ~ 10053076 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU10094
TTCGTATTAGAAGGATCTGTGGCTTGAGATCATTCTGCCAATCTCATTGCCAACATTGACCGGAACTGGCCAGAAACTCAGATGTTGGGCCTGTAGTTCAAGCCTTCACTTTTTCCAACATTTCAGTTGACCTCAATCACCCAGTTGCCTAATGAGGCGCCACTATTTCAGTGGGCCCCAAGAGAACGTTTAGAAGATAATTGTCTCGTTTAGAAAAATTGGGTACTGGGTAAAGAATGAGGCAGGCTTTAACCTGCTATAACAGTCAAATGATTTGCTGAAATCAAGCAATTGTGAAGCACAGAGCCACATCAGTACTATAGTAAACACTAAAAGCCAAGCTTAACAGATGACCACAACCGAAAAAGTGCAAAAGTcctgtatattattttatagaattCTGATTTCTACCGtacaatgttttatttattgaTTACAAGGAGCACCCTGTGATCATAGTGATTTATAGACGTTTATTTAGTTGTATGTTTTTAACTGCTTTACCTGGCTTTGCATTAATTAGGTAAATGTCAAAGAAAAGGCTGGTGGTTTTTATTACACCCCGAAAACACATCCTGGAGGTGACTTGGATGGGAAAAGTATTCCATATCAGTGTTGAAATGCTCACTGATTCGTGTGGGTAACATACATGTCGGTTGTGTTAGCTTTCACATTTGTGCCAATGTCATTCGCTGACCCGCAGCTGTGAACTGAAAACAAGTCATCATTGACAATTCATTGTTTCTCTTCGCTTGCTTACAGAAAGtgccagctcccccccccccctaaatctGAATCAAATCAATGTAATTTTATTACGCCTGGCCTGTAACAAGGTCCTCTGATGCCTGACTTCATAAAGTGCCCAATAAAAGAGAAGTGGACATTCCTTCAATGCTGTTAAAACTCTTTGTTTTCCCCAAATTAAATGAATCTCATTGTGAATGATGAGGATCCAAtgagaaatgtgttcattttttAAGACAGGAAAGACATGACAAAATGGCAGGATGAAGTTtggtctctttttttttttacaccaacATGGCTGCCAGTGAAACAATCCCCAACTCCTGAAAGCATTGTTGATTGTGTTGATTCCTCAGCTGAGACATCACCTGGGACAACAGAGCACCATAGCTATTCATGACCAAAAAAGGATGTCCTATAACACTGATAATTGAGGCTTGACCACAGCACCCTATAAGATGCACCGATATTAACAATTTTAACCTGAAATAGTGACCGCATTGAAATGTGCCTGTGCAGTCCCACTGATCATGTTGGTTGGCTGGGACCAATGGTTTCTAGGCTTCAGTAGTCGAAGGTGCTCAACCTCCCTGTATTTGACCATGTCATTGTATTTCTTTACAGTCTTCTATAGTTGTATTCATCATATGAAACGACTATTTGGTAAGAGCAGCCATGACGAGTATCCTACCTGATGAGATGCTGAGCCTCAGGCTGCAATGAACAGtgtgtgatgttttttttaagtctCCTTGACATATATATTCAAAGTCATTAAAAAGCCTGATAGTGTACTGGCCTGGATTTCCAGGTCAAAGCAAAAGTAAGGAAGCAGAATGTGTTCTGTTGACTTGTGGATGGTCTTGCCTTGGGGATTGAGGTATAATATTATCAAAGCAGTATTTTTAGAATTTGGACAGAGTTCTGAAAACGGTGGAGCGTATATAGAGAAAAGCAAACAGACGTCGATAATAAACATTACATTTAGTGATCACCACAAACACAAAGGAAGCCTTTTGGCTGTTGGATCTATTGGGACAGTCTTAAATAGATAtgtctttatttatttgtttgtgttttaAGCCAGTGAAACCCAGGGACTTGGTGCCATGATGACTCTGACAGTGCTATTGTGTGAAATTATAATCACTTGTTATGGAATAATTTTTTTATATAGTCTTTTCACaccagattttttttgttttgtatttgtacAGTGGCTTGGTGATACTGATGGGTTGCCAGGAGTTGATATTGTAACCAATAAAAAAAGCTTTTAACCAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10094 True 2036 lncRNA 0.37 1 10051041 10053076

Neighbor

gene id symbol gene type direction distance location
LOC110533060 gnb4 coding upstream 2364 10012701 ~ 10048677 (+)
LOC110510920 LOC106574155 coding upstream 63346 9980527 ~ 9991542 (+)
LOC118937321 LOC106574127 coding upstream 86718 9956678 ~ 9964323 (+)
LOC118966382 LOC106574155 coding upstream 105959 9937165 ~ 9945082 (+)
LOC118937370 LOC106574127 coding upstream 126284 9917155 ~ 9924757 (+)
ftsj3 ftsj3 coding downstream 34224 10087300 ~ 10096757 (+)
asb3 LOC106574148 coding downstream 43867 10096943 ~ 10101637 (+)
lim2.2 LOC106574149 coding downstream 51093 10104169 ~ 10107888 (+)
gipc3 LOC106574151 coding downstream 87154 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 coding downstream 1380026 11433102 ~ 11514427 (+)
G8266 NA non-coding upstream 38974 10011850 ~ 10012067 (+)
G8265 NA non-coding upstream 39811 10011016 ~ 10011230 (+)
G8264 NA non-coding upstream 41691 10009020 ~ 10009350 (+)
G8263 NA non-coding upstream 42536 10008010 ~ 10008505 (+)
G8238 NA non-coding upstream 103781 9927839 ~ 9947260 (+)
G8295 NA non-coding downstream 28092 10081168 ~ 10083667 (+)
G8304 NA non-coding downstream 65934 10119010 ~ 10134267 (+)
G8600 NA non-coding downstream 84258 10137334 ~ 10137566 (+)
G8651 NA non-coding downstream 167268 10220344 ~ 10222076 (+)
G8652 NA non-coding downstream 169181 10222257 ~ 10224611 (+)
LOC118966784 LOC106574127 other upstream 591088 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 1795163 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1820806 8229189 ~ 8231566 (+)
G6807 NA other upstream 2013887 8036617 ~ 8037154 (+)
LOC110538561 LOC106574035 other downstream 3185537 13238613 ~ 13295452 (+)
G12410 NA other downstream 3575787 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 4139380 14192456 ~ 14214939 (+)

Expression


Co-expression Network