XLOC_019919 (elf3)


Basic Information

Item Value
gene id XLOC_019919
gene name elf3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 661505 ~ 665371 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039737
AGGAGCAGGTGCAGCAGAACGCTCAATGCTAAAGCAGATCTCTCACTGACTGGATTATTACTGACGCAGCTCTCACACTGGGATTTTACCTGGAAAACAATCTTTGACCACCACAACTGGATCCTCATGGCGTCAAGCGAACTTAGTCTAATTCTCAACAACGCCAATGCCAACCTGTACCCTGAGCCGCAGGCCAGCCTGTTGAGCATGTGCAGACCACCGCATCTCTCCGAGATCACCTTCAACAGCAACAGCACATTAGGCTCCTGGGACCAGGTGAACCCGCAGATGTGGAGCAGGCAGAACGTTCTGGAGTGGATCGGCTTTCACGTGGAGGAGAGCAGATTCGACGCCGGCTTGCTGAATCTGAACTACTGCACCATGGATGGGCTCACACTTTGCGCAACATCCAAGGAAGCGCTGATGAGCATGTTCGGGCCGGAGTTGGGCAATCTGCTACACCACAGTCTGGAGAGCCTGAAGGCGAGATATGTTAATGACCTATCTGAGAACACCGTCCTGAGCGAATCCGAGTTTGAGCTACTAGACAACATCCTGCAGAACTCATTTCCCTCCATGCATGGACCAGGCCTGGGGCCTCTGCTGGAAACTGTGGTGGTCCAGTCTACAATTCCAACAGACAATTCAGACGCCAAATACAGCTACTTCGATGAGTACACCAGCCAGCTGACCCCAGAGAGTGACCACGGCTACGACTCTCTCACGGAGAGCTTTCAGAGTTCCCATGCTGGCAGCTTCCTGAACCCGAGCTCACCTGAGTCCAACAGCAGTGATTCTGACCCTGAATACTCGGAGACTCCTTACTCCATCAGCTCCAAGAACTTTTCAAAACAAGAGCCAGAAAAGACCAAGAGAGGCAGAGGACGACCTCCCAAGCTCAGGGATAGTGACGGATTTGATCACTTCATTCAGTCCAAGAAAAGCAAACATGCTCCAAGAGGAACCCACCTGTGGGAGTTCATCCGGGATATCCTGATCCACCCGGAGCAGAACCAGGGGCTGATGAAGTGGGAGGACCGCAGGGACGGCGTCTTCAAGTTCTTGAAGTCTGAAGCTGTTGCTCAGCTCTGGGGGCAGAAGAAGAAGAACAGCAGCATGACCTACGAGAAGCTCAGCAGAGCCATGAGGTATTACTACAAGAGAGAGATTCTGGAGAGGGTGGACGGACGGAGGCTTGTTTACAAGTTCGGGAAGAACTCCACCGGTTGGAGGATAGAGGAGACCGGTTATTAAAGTTGACCGTCGGAGATCGCTTTCAGGAAAAATGTAGAGACTTTGGACTCCTGCTAATGAGGAACTTTAAGCTAAGCTTGGATGCTCTGAAGATCCTCCCTTTAGAAACGCTCTCTTCCCAGAGGGAAAAGGTTTCACAGAAACTGTAAGCCAGTGTTTTGGCTAAAGTAGGTTTTATGAACCGGTAAACAGTGGCGATTGTCTGGTTGTAAGGGCACGCAGGCGTAGCCTGGTCCAGATATTGCTACACCACTAAAAGAGTCTAAGTCAGAGatgtcaaactcgattcctggagggccgcagccctgcacatttagttccaaccctgctccaacacacttataggtttcaaacaagcctgaaggactcgattcgcttgatcaggtgtgtttaattagggttggaactacacATTgcagtttgacatccctggtctaaGTCAACGGTTGTTCCACACAATGGAGAACGTCAAGCTTTACGAAGGCTCTTGGTATTGGGAAATGAAGTTTGATGTGTATTTTGGTCAGAGCTGATTACCTGAAGTGAAGGTGACGTTCAGATTCGCTCTGCTGTATATAAATGAACTATATATTCTTCATAATAATTGTCAATCGTGTACAAATCAGATATATCACCTGAGATTACTCCTAATTGTTTTCTGTGATTTTTTTGAAGTCACTGGATTATGTGTATGAGGATTCCCTCTGAGACTGTATGCTGTTGTAAGGCATGTATTTGCTGTTTTTTGTATgacttttctaaataaaatacaatttcagATCTAAAA
>TCONS_00039738
GATCCTCATGGCGTCAAGCGAACTTAGTCTAATTCTCAACAACGCCAATGCCAACCTGTACCCTGAGCCGCAGGCCAGCCTGTTGAGCATGTGCAGACCACCGCATCTCTCCGAGATCACCTTCAACAGCAACAGCACATTAGGCTCCTGGGACCAGGTGAACCCGCAGATGTGGAGCAGGCAGAACGTTCTGGAGTGGATCGGCTTTCACGTGGAGGAGAGCAGATTCGACGCCGGCTTGCTGAATCTGAACTACTGCACCATGGATGGGCTCACACTTTGCGCAACATCCAAGGAAGCGCTGATGAGCATGTTCGGGCCGGAGTTGGGCAATCTGCTACACCACAGTCTGGAGAGCCTGAAGGCGAGATATGTTAATGACCTATCTGAGAACACCGTCCTGAGCGAATCCGAGTTTGAGCTACTAGACAACATCCTGCAGAACTCATTTCCCTCCATGCATGGACCAGGCCTGGGGCCTCTGCTGGAAACTGTGGTGGTCCAGTCTACAATTCCAACAGACAATTCAGACGCCAAATACAGCTACTTCGATGAGTACACCAGCCAGCTGACCCCAGAGAGTGACCACGGCTACGACTCTCTCACGGAGAGCTTTCAGAGTTCCCATGCTGGCAGCTTCCTGAACCCGAGCTCACCTGAGTCCAACAGCAGTGATTCTGACCCTGAATACTCGGAGACTCCTTACTCCATCAGCTCCAAGAACTTTTCAAAACAAGAGCCAGAAAAGACCAAGAGAGGCAGAGGACGACCTCCCAAGCTCAGGGATAGTGACGGATTTGATCACTTCATTCAGTCCAAGAAAAGCAAACATGCTCCAAGAGGAACCCACCTGTGGGAGTTCATCCGGGATATCCTGATCCACCCGGAGCAGAACCAGGGGCTGATGAAGTGGGAGGACCGCAGGGACGGCGTCTTCAAGTTCTTGAAGTCTGAAGCTGTTGCTCAGCTCTGGGGGCAGAAGAAGAAGAACAGCAGCATGACCTACGAGAAGCTCAGCAGAGCCATGAGGTATTACTACAAGAGAGAGATTCTGGAGAGGGTGGACGGACGGAGGCTTGTTTACAAGTTCGGGAAGAACTCCACCGGTTGGAGGATAGAGGAGACCGGTTATTAAAGTTGACCGTCGGAGATCGCTTTCAGGAAAAATGTAGAGACTTTGGACTCCTGCTAATGAGGAACTTTAAGCTAAGCTTGGATGCTCTGAAGATCCTCCCTTTAGAAACGCTCTCTTCCCAGAGGGAAAAGGTTTCACAGAAACTGTAAGCCAGTGTTTTGGCTAAAGTAGGTTTTATGAACCGGTAAACAGTGGCGATTGTCTGGTTGTAAGGGCACGCAGGCGTAGCCTGGTCCAGATATTGCTACACCACTAAAAGAGTCTAAGTCAGAGatgtcaaactcgattcctggagggccgcagccctgcacatttagttccaaccctgctccaacacacttataggtttcaaacaagcctgaaggactcgattcgcttgatcaggtgtgtttaattagggttggaactacacATTgcagtttgacatccctggtctaaGTCAACGGTTGTTCCACACAATGGAGAACGTCAAGCTTTACGAAGGCTCTTGGTATTGGGAAATGAAGTTTGATGTGTATTTTGGTCAGAGCTGATTACCTGAAGTGAAGGTGACGTTCAGATTCGCTCTGCTGTATATAAATGAACTATATATTCTTCATAATAATTGTCAATCGTGTACAAATCAGATATATCACCTGAGATTACTCCTAATTGTTTTCTGTGATTTTTTTGAAGTCACTGGATTATGTGTATGAGGATTCCCTCTGAGACTGTATGCTGTTGTAAGGCATGTATTTGCTGTTTTTTGTATgacttttctaaataaaatacaatttcagATCTAAAAGCGTTTCTTTATCTCACATTTACGCCTCGCCCTCTTTAACTGCATTCCTCTCAACCTTACTTCAACATTTGCTCTGTGTTTGGCCGATTTGCTCTCCTTATCAGAGATCACTGAAGTGTTGAAATGCGATGCCTTCATGTGTTCAAGTTCAAGAGTTTTTACAAATCTCCCACATCTGAGATACATGAAGCATAACCGGTTTTAAAATGCTGGTCAAACGTCAAACACATCG
>TCONS_00039739
CAGAAGCTGCGGCCCTGGAGACAGTAAACCTGAGCGGCTATTCTTCTATTGTTAGAGGCGTCTCGTCATGTCAGGTGTGATTGAGGCTAAATGTGCTCCCGTTCTCCGGCAGGCTCCTGGGACCAGGTGAACCCGCAGATGTGGAGCAGGCAGAACGTTCTGGAGTGGATCGGCTTTCACGTGGAGGAGAGCAGATTCGACGCCGGCTTGCTGAATCTGAACTACTGCACCATGGATGGGCTCACACTTTGCGCAACATCCAAGGAAGCGCTGATGAGCATGTTCGGGCCGGAGTTGGGCAATCTGCTACACCACAGTCTGGAGAGCCTGAAGGCGAGATATGTTAATGACCTATCTGAGAACACCGTCCTGAGCGAATCCGAGTTTGAGCTACTAGACAACATCCTGCAGAACTCATTTCCCTCCATGCATGGACCAGGCCTGGGGCCTCTGCTGGAAACTGTGGTGGTCCAGTCTACAATTCCAACAGACAATTCAGACGCCAAATACAGCTACTTCGATGAGTACACCAGCCAGCTGACCCCAGAGAGTGACCACGGCTACGACTCTCTCACGGAGAGCTTTCAGAGTTCCCATGCTGGCAGCTTCCTGAACCCGAGCTCACCTGAGTCCAACAGCAGTGATTCTGACCCTGAATACTCGGAGACTCCTTACTCCATCAGCTCCAAGAACTTTTCAAAACAAGAGCCAGAAAAGACCAAGAGAGGCAGAGGACGACCTCCCAAGCTCAGGGATAGTGACGGATTTGATCACTTCATTCAGTCCAAGAAAAGCAAACATGG

Function

symbol description
elf3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including inflammatory response; regulation of transcription, DNA-templated; and transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in post-vent region. Orthologous to human ELF3 (E74 like ETS transcription factor 3).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0006954 inflammatory response biological_process
GO:0030855 epithelial cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko04712 Circadian rhythm - plant
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-030131-8760 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including inflammatory response; regulation of transcription, DNA-templated; and transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in post-vent region. Orthologous to human ELF3 (E74 like ETS transcription factor 3).

Ensembl:

ensembl_id ENSDARG00000077982

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039737 False 2041 mRNA 0.48 9 661505 665139
TCONS_00039738 False 2154 mRNA 0.47 8 661711 665371
TCONS_00039739 True 803 lncRNA 0.53 5 662103 663854

Neighbor

gene id symbol gene type direction distance location
XLOC_019918 pth4 coding upstream 23950 635813 ~ 637555 (+)
XLOC_019917 med20 coding upstream 76895 558287 ~ 584610 (+)
XLOC_019916 nuak2 coding upstream 126051 508290 ~ 535454 (+)
XLOC_019915 celsr2 coding upstream 193068 413349 ~ 468437 (+)
XLOC_019914 capzb coding upstream 250961 396840 ~ 410544 (+)
XLOC_019920 gpr37l1a coding downstream 31560 696931 ~ 701105 (+)
XLOC_019921 zgc:162255 coding downstream 59268 724639 ~ 733339 (+)
XLOC_019922 znf76 coding downstream 71840 737211 ~ 753392 (+)
XLOC_019923 cry3b coding downstream 121185 786556 ~ 809282 (+)
XLOC_019924 NA coding downstream 146229 811600 ~ 817627 (+)
XLOC_019910 NA non-coding upstream 352301 240168 ~ 309204 (+)
XLOC_019909 NA non-coding upstream 374316 219167 ~ 287189 (+)
XLOC_019902 NA non-coding upstream 601137 51545 ~ 60368 (+)
XLOC_019903 NA non-coding upstream 604765 53914 ~ 56740 (+)
XLOC_019901 NA non-coding upstream 633661 24421 ~ 27844 (+)
XLOC_019927 NA non-coding downstream 258140 923511 ~ 938827 (+)
XLOC_019938 CU570769.1 non-coding downstream 584417 1249788 ~ 1267820 (+)
XLOC_019944 NA non-coding downstream 651381 1316752 ~ 1364861 (+)
XLOC_019947 BX322657.1 non-coding downstream 711960 1377331 ~ 1384069 (+)

Expression


Co-expression Network