G8651


Basic Information

Item Value
gene id G8651
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 10220344 ~ 10222076 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU10555
TAATACAAAGTCAACATATCTACATACACAGTGGTTTTTAACCAATCATTGTTTCAGTTAGAAGTAACAGTTTGAAAGCGATAGCACTTGGCCCTCATACAAAGAAAAACTATTTTGATTGAGCTTAGGTTTTTTATCTTTTTGTTGGCTGTTGTACGTATAGGTTCTATTATTTTATAGTAATTTTTCTCTTTTGTTAATTTCCCCACCTCGGTCGAACATTCCAGTAGATTTGGCTGCTATTGTTGTCAAAAGTCTGGCATCTTAACATGAAGTCAAAGAGTAACACATGGCACAAACTTCCAAAGATGTCCAGTCTTGTTTTTTGTCATTGGCCCTTAACCAGTCTTTGAATTCAGTCATAAAAAAAGTCCTAATTTCAAGATAATTTCAAGATTTGTTCATATGAAAAGGTCTGCGATTCCCACTTGAAAAGGATATGCTGGAAATGTCTTTGTTGTTTCGTCTTCCTTCGTCCTAGTCTTTGCATCACACGGCTCCTTCTCATTCAGTCCTGACTCATTCTGCATCCCGTAACAAAACATAAAAATAATAAGAAGAATGAACACAGTATGGTACTAGGTTCTTACAGTATAATGAACCCTCTTACATCATGTCATGATTCAGGGTCAgtggtagtgtactgtagtactTTGCCCTTAATGGCTGTGTCATCGCACTATGGCCAGTTGCTAAGTAGTAGAGAATATCTCTTGTTTCTCTCTATGACTGCCAATGGACAATCCACTTCTTGGCTTTTTAGGCAGTTGGGAACTAGCACTTCTCCTTTTTTGGGGATGGAAAGATAGAGCTTTTGTTTTGGAAAGGAATAGTCCTTTGGTTGCCGTTTCCCAGCCCTGTTCACTTTGGGGCCAGAGAGCAGGCGCCATTTTGATTGCAAGAAGCCTGTGCTGAGGCAAAAGTTCTGGGTCGTCATTGACCTCTCATAACAGAGTTAGCTGTGGGTGGCTAGCAGGGGATATTGCTAACATGGCAGATATGCCAAAGAAGGAGGGGACTTAAGAACAGAGAGCAGAGTGGACTACAAATGTTATAAAGGGAGAAAGTAGACTTCACACTGTGAACTTTGCAATGATTAGAACCTTATCTTTGCAGTTCAGTATTCGATCTGAAGTAAGAGAGCGTTGAGAGTTAAATCAAACAAATACATATAATctatatgtttgtttatttacaGGTGTTATATTCTGGATCATAGTTGATATCTAACAAATGGATGATCGTGTTGTGTCTGAAAAGAAAAATTaaaagaaagaggaggaaataATGGACttctgagaaagagggagatgacgGTCTGTACATGGTCAAAAAGTACAGTACCTTTAGTCTGGCAAATTCAGCAGAATGGGAAATACCTTTCCTCCAATTGAATGCTTTGTAGACTATTTAATCTACTACATATGAAAATAATACTCAAACAAATACATGACTGTTGTTAGCTAATGATAATAGTAATTTCAACAACAATTAAAAAGACACCATCTCCTTATCGGCACAGGTCTACCAAGTGGTAGGTTTTAAAAAGGGCTGCTGGAGCGGCGCCCGGGCCAGACACCTCCCCTAATTGTTTCCAGAGAAACACACAATATTTCCCAAGGTTAAGTTCATGGCTACAAAACAAATCCATCAGAATTTTACATGAGCAAAATGAAAGTTTATGGGTGgtaaaaaatacctaaaaataAGAAACAGAAAAAAATATGTTTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10555 True 1733 lncRNA 0.39 1 10220344 10222076

Neighbor

gene id symbol gene type direction distance location
gipc3 LOC106574151 coding upstream 57396 10140230 ~ 10162948 (+)
lim2.2 LOC106574149 coding upstream 112456 10104169 ~ 10107888 (+)
asb3 LOC106574148 coding upstream 118707 10096943 ~ 10101637 (+)
ftsj3 ftsj3 coding upstream 123587 10087300 ~ 10096757 (+)
LOC110533060 gnb4 coding upstream 171667 10012701 ~ 10048677 (+)
LOC110523899 LOC106574090 coding downstream 1211026 11433102 ~ 11514427 (+)
LOC110534079 LOC106574089 coding downstream 1442532 11664608 ~ 11666692 (+)
ccdc50 ccd50 coding downstream 1623643 11845719 ~ 11879266 (+)
LOC110534540 LOC106574080 coding downstream 1681615 11903691 ~ 11906713 (+)
LOC110534688 LOC106573995 coding downstream 1700500 11922576 ~ 12025076 (+)
G8600 NA non-coding upstream 82778 10137334 ~ 10137566 (+)
G8304 NA non-coding upstream 86077 10119010 ~ 10134267 (+)
G8295 NA non-coding upstream 136677 10081168 ~ 10083667 (+)
G8253 NA non-coding upstream 167268 10051041 ~ 10053076 (+)
G8266 NA non-coding upstream 208277 10011850 ~ 10012067 (+)
G8652 NA non-coding downstream 181 10222257 ~ 10224611 (+)
G8695 NA non-coding downstream 77806 10299882 ~ 10301188 (+)
G8764 NA non-coding downstream 195267 10417343 ~ 10420536 (+)
G8846 NA non-coding downstream 339068 10561144 ~ 10562327 (+)
G8871 NA non-coding downstream 395153 10617229 ~ 10671287 (+)
LOC110510920 LOC106574155 other upstream 228802 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 760391 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 1964466 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1990109 8229189 ~ 8231566 (+)
LOC110538561 LOC106574035 other downstream 3016537 13238613 ~ 13295452 (+)
G12410 NA other downstream 3406787 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 3970380 14192456 ~ 14214939 (+)
G13380 NA other downstream 4457274 14679350 ~ 14679578 (+)

Expression


Co-expression Network