XLOC_019921 (zgc:162255)


Basic Information

Item Value
gene id XLOC_019921
gene name zgc:162255
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 724639 ~ 733339 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039742
cacacacttaataaacacacacttaacacactcactcataaacacacacttaataaacacacacttaacacactcattcataaacacacacttaataaacacacacttaacacactcattcataaacacacacttaacacactcactcataaacacacacttaacacACTCACTCATAAACACACTTAATAACACACACTCATTTTCATGCACTTaatcactcacaaacacactgaacacacactcactcaaaaacacacactcaattacacacactaactcactcacacacataaacacacacacagacggacGGTGACCATGGGCTCGTCTCTCAGTGAGCCCTGCATCTATGATAAGCTGTCGGAGAGCATCGATATCCTCCGTCAGTCCGGCTACCGCTATGGCATGTCGGAGCGCGAGATCGAGAAGTTCATCAAGCAGGTGCTGGAGACCAACGAGCCGCGCAGGGAGCCGCCGCAGTTCCCCATACTCAGGGCCACCGTCAAGTTTGTGGTGGCGGTGGGCGTGGTGCTGATGGCGGTGCTGGTCTTCACGTATCCTCAGTCTCCGGTGCTCATGGGTTCGGTGAGCGGCACCACACTGAACAATTCCTCTCCGCTGAGCCACATTCGCCTGCTGGAGCTGCCCATCGCTGAGAAATACAACCTGCACGGTTTTCATGAGTGGTGGGCATCCAGCAGTCTGCAGTCGATGGATCTGAACTGCTCCGCCTGCGCAGACGTGACCGATATACTGGAGCTCACAGACCAGCTGAGGACATCTgcaggagaacacacacacacacaactactgCTGCtgaagggtggAGCGGCTCTCTCTCTCCGTGTGTCTCAGATGGATCAGTTCTCCTCCGTCTCTCAGACTCCTGCAAACTTCACTCTGCTGTGGAGTGTGTCCTCCAGGCCCAGAGAGTCAGTTCTTCAGTGGTTGTTCCCGGAGTCGGAGCGCTGCCCCCTGCTGGAGATCTGGAGCTCCACACTGCAGCGCTGCAGACTGAGCAGCAGACGCCCACAGCCCTCCAGAGTGCAGGTGTTGGGCTGGATGGTGGTCGCTGACGGATCTCCAGATGTTCGTCTGCTTCCAGTGCAGAGATGCCGAAAACACTGCAGATCCTTCAGTCTGAGGCTGGAGCCCGGGGACATGGTGTTCGCCGACTCGCAGTTCTGGCTAATGGAGCTTTCTCCGTCCGGAGCGCAGGACGTCCAGTGTGACAGTGCGGTGCTTTGAGGAAAAACACTGCTGTGCCAATGAACATTCAGATCTCAGGTGTCCAGACTGCGTTCAGGAAATGACATCGGCCTTGGTTTTTTCTTCATGGGGACACAATTCTGTTTCTGTTGAGCTTCTGTGATGTTTGCTGGTCTTCTGTCTGGATGAGCCGCGGGAACGGTCGTGTTTCAGCCCAAAGCTGGTGTTGTGGAAATGATATTTTGCTTAAAGACAGACACTTTAGTACAGTCTCACGCGATGTTCATGACGATTAAGCTCATTTTGTCCTACTGTGATGCAAAAGAAATCATTTTCGTTACAGACTGCTAAAACATTCTCATTACCGTAAtgcaaaacatttacattttgctgtactgattaaatattaatataagagTTTCATATTAGGTTAATGAGAGTATTTTCGTTTGATTACAATGATAAACTGATTTTCTGtgatttgttgtttctaaattgTAGTcaagaattgtatttattttgtaagaTGGTAATGAGTGTGTATTTACCAATATGGAGACTATTTCGCTGTATTACAGTGacgttttttttgttaatttttcatCATATAGGCATTTTTTGATGGCAGTAATGAGAATAGTTTTTTGGTGTATCACTTAAACGAGAAGGGTAATTTTACTTAATTATGTTatggtaaatgtttattttgtgtagcggtaatgataatatttttccatgacggcaatgaaaataataatttcttgctGTATTGTGGTAATGAAAACAGtggtttttgtttaaaatattttccatattatggtaaatgtttattttctgtaatggtaatgataatatttttacaaaaataatgagaataatatATTGGTGCGTTACGGTAATGAGAAGAATACGTTTAGTTataaaatatttccattttatgGTAAATAcgtttattttgtgttgtgttcaTGAAAATATTTTCATGACGGTAATCAgactaataatttatttttcattatggtAATGAGGAAAATAATTTTGACCAAAATATTTTCCATGTTAtcgtaaatgtttattttgtgtagCGTAATGATCTTATTTTTCCACAATGGTAATTTTTTTGCTGTATTACAGTAATGAGAATGATCATTTTAGTTTAGAATATTTTCCATTTtatagtaaatgtttattttgtgcaGCGGA

Function

symbol description
zgc:162255 Predicted to be involved in several processes, including epithelial cell proliferation; positive regulation of histone deacetylase activity; and wound healing. Predicted to be located in midbody and plasma membrane. Predicted to be active in Golgi membrane and nucleolus. Orthologous to human C6orf89 (chromosome 6 open reading frame 89).

GO:

id name namespace
GO:0045787 positive regulation of cell cycle biological_process
GO:0050673 epithelial cell proliferation biological_process
GO:1901727 positive regulation of histone deacetylase activity biological_process
GO:0042060 wound healing biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0030496 midbody cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-51 Predicted to be involved in several processes, including epithelial cell proliferation; positive regulation of histone deacetylase activity; and wound healing. Predicted to be located in midbody and plasma membrane. Predicted to be active in Golgi membrane and nucleolus. Orthologous to human C6orf89 (chromosome 6 open reading frame 89).

Ensembl:

ensembl_id ENSDARG00000078301

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039742 True 2415 mRNA 0.42 7 724639 733339

Neighbor

gene id symbol gene type direction distance location
XLOC_019920 gpr37l1a coding upstream 23534 696931 ~ 701105 (+)
XLOC_019919 elf3 coding upstream 59268 661505 ~ 665371 (+)
XLOC_019918 pth4 coding upstream 87084 635813 ~ 637555 (+)
XLOC_019917 med20 coding upstream 140029 558287 ~ 584610 (+)
XLOC_019916 nuak2 coding upstream 189185 508290 ~ 535454 (+)
XLOC_019922 znf76 coding downstream 3872 737211 ~ 753392 (+)
XLOC_019923 cry3b coding downstream 53217 786556 ~ 809282 (+)
XLOC_019924 NA coding downstream 78261 811600 ~ 817627 (+)
XLOC_019925 dennd2db coding downstream 102389 835728 ~ 856886 (+)
XLOC_019926 stk38b coding downstream 150339 883678 ~ 898645 (+)
XLOC_019910 NA non-coding upstream 415435 240168 ~ 309204 (+)
XLOC_019909 NA non-coding upstream 437450 219167 ~ 287189 (+)
XLOC_019902 NA non-coding upstream 664271 51545 ~ 60368 (+)
XLOC_019903 NA non-coding upstream 667899 53914 ~ 56740 (+)
XLOC_019901 NA non-coding upstream 696795 24421 ~ 27844 (+)
XLOC_019927 NA non-coding downstream 190172 923511 ~ 938827 (+)
XLOC_019938 CU570769.1 non-coding downstream 516449 1249788 ~ 1267820 (+)
XLOC_019944 NA non-coding downstream 583413 1316752 ~ 1364861 (+)
XLOC_019947 BX322657.1 non-coding downstream 643992 1377331 ~ 1384069 (+)

Expression


Co-expression Network