G9341


Basic Information

Item Value
gene id G9341
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 10780125 ~ 10780682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU11290
cgaaagcattccacagagatGCCGGCCCGTGTTgactcccacagttgtgtcaagttggctggatgtctttgggTGGTGACACATTCTTGATTTAAGTGAGAAAcctagcagcgttgcagttcttgtcacaaaccggtgtgcctggtacctactacgatatcccgttcaaaggcacttacattgtttgtcttgcccattcaccctttgaatgacatgtaaacacaatccatgtctcagttgtctcaagacTAAAAATCATTCTTCAACAAgtcacctccccttcatctacactaattgaagtggatttaacaggtgacatcaataagggatcatagatttcacctggattcacctggtcagtctatgtcatggaaagagcaggtgttgttaatgttttgtatactcactGTACATTTGGACAGGAAACATAGttacatgttgtcaacattcCTTTGATTCTAAGCCAACCCGGACTGTTTAGCCCCAAGGGTTGCTCACTCATTGGTTTTGTTTCTGAACAACTCACCCGTCTATCTGATTTGGTTTTAGGTGTGTATG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11290 True 558 lncRNA 0.42 1 10780125 10780682

Neighbor

gene id symbol gene type direction distance location
gipc3 LOC106574151 coding upstream 617177 10140230 ~ 10162948 (+)
lim2.2 LOC106574149 coding upstream 672237 10104169 ~ 10107888 (+)
asb3 LOC106574148 coding upstream 678488 10096943 ~ 10101637 (+)
ftsj3 ftsj3 coding upstream 683368 10087300 ~ 10096757 (+)
LOC110533060 gnb4 coding upstream 731448 10012701 ~ 10048677 (+)
LOC110523899 LOC106574090 coding downstream 652420 11433102 ~ 11514427 (+)
LOC110534079 LOC106574089 coding downstream 883926 11664608 ~ 11666692 (+)
ccdc50 ccd50 coding downstream 1065037 11845719 ~ 11879266 (+)
LOC110534540 LOC106574080 coding downstream 1123009 11903691 ~ 11906713 (+)
LOC110534688 LOC106573995 coding downstream 1141894 11922576 ~ 12025076 (+)
G9315 NA non-coding upstream 40366 10739548 ~ 10739759 (+)
G9307 NA non-coding upstream 46145 10733770 ~ 10733980 (+)
G9273 NA non-coding upstream 73683 10706222 ~ 10706442 (+)
G9249 NA non-coding upstream 89601 10690325 ~ 10690524 (+)
G9242 NA non-coding upstream 96118 10683662 ~ 10684007 (+)
G9368 NA non-coding downstream 18158 10798840 ~ 10799055 (+)
G9442 NA non-coding downstream 80655 10861337 ~ 10861581 (+)
G9443 NA non-coding downstream 80928 10861610 ~ 10861878 (+)
G9444 NA non-coding downstream 81775 10862457 ~ 10862718 (+)
G9446 NA non-coding downstream 82611 10863293 ~ 10869887 (+)
LOC110510920 LOC106574155 other upstream 788583 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 1320172 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 2524247 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 2549890 8229189 ~ 8231566 (+)
LOC110538561 LOC106574035 other downstream 2457931 13238613 ~ 13295452 (+)
G12410 NA other downstream 2848181 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 3411774 14192456 ~ 14214939 (+)
G13380 NA other downstream 3898668 14679350 ~ 14679578 (+)

Expression


Co-expression Network