G9442


Basic Information

Item Value
gene id G9442
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 10861337 ~ 10861581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU11391
atacaaaaccccatggcaaaatggatAGAATTGCAAGAATTGAACTTCCTGAACACAGTCCAGAATATATGCAGTATATGTAAGTGGATGGTGTATAGACGGTATAGACAATATGTGAATAGAAAAGTGTATACAGccgtagttatataggatgagccttgactagaatacaatatatacatatgaagtgggtaaaacagtatgtaaacattcaAGTGACCAGTATCCATTGACTcgatgtacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11391 True 245 lncRNA 0.40 1 10861337 10861581

Neighbor

gene id symbol gene type direction distance location
gipc3 LOC106574151 coding upstream 698389 10140230 ~ 10162948 (+)
lim2.2 LOC106574149 coding upstream 753449 10104169 ~ 10107888 (+)
asb3 LOC106574148 coding upstream 759700 10096943 ~ 10101637 (+)
ftsj3 ftsj3 coding upstream 764580 10087300 ~ 10096757 (+)
LOC110533060 gnb4 coding upstream 812660 10012701 ~ 10048677 (+)
LOC110523899 LOC106574090 coding downstream 571521 11433102 ~ 11514427 (+)
LOC110534079 LOC106574089 coding downstream 803027 11664608 ~ 11666692 (+)
ccdc50 ccd50 coding downstream 984138 11845719 ~ 11879266 (+)
LOC110534540 LOC106574080 coding downstream 1042110 11903691 ~ 11906713 (+)
LOC110534688 LOC106573995 coding downstream 1060995 11922576 ~ 12025076 (+)
G9368 NA non-coding upstream 62282 10798840 ~ 10799055 (+)
G9341 NA non-coding upstream 80655 10780125 ~ 10780682 (+)
G9315 NA non-coding upstream 121578 10739548 ~ 10739759 (+)
G9307 NA non-coding upstream 127357 10733770 ~ 10733980 (+)
G9273 NA non-coding upstream 154895 10706222 ~ 10706442 (+)
G9443 NA non-coding downstream 29 10861610 ~ 10861878 (+)
G9444 NA non-coding downstream 876 10862457 ~ 10862718 (+)
G9446 NA non-coding downstream 1712 10863293 ~ 10869887 (+)
G9458 NA non-coding downstream 8320 10869901 ~ 10870297 (+)
G9464 NA non-coding downstream 12848 10874429 ~ 10874896 (+)
LOC110510920 LOC106574155 other upstream 869795 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 1401384 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 2605459 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 2631102 8229189 ~ 8231566 (+)
LOC110538561 LOC106574035 other downstream 2377032 13238613 ~ 13295452 (+)
G12410 NA other downstream 2767282 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 3330875 14192456 ~ 14214939 (+)
G13380 NA other downstream 3817769 14679350 ~ 14679578 (+)

Expression


Co-expression Network