XLOC_019925 (dennd2db)


Basic Information

Item Value
gene id XLOC_019925
gene name dennd2db
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 835728 ~ 856886 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039752
CAGCTTGAACgtgtgtgtttttcagtcagcgcgtgtgtgtgtgagagaaacagCAGCATCACAGACAGAGATGAGCACAGAGAAGTGGAGGACAGGACGACAAATACAACAACTACACACTCCAACCGACAACGTTGATCGCAGTGCCATGAAGAAGATCAGCTCCATGTTCTCAGCATTACAGGAGAAGTTCCAGAGAGCAAAGGCCGGAGCCCCTACCCCCGCGGCCGTGGCGCCCCCTGCTGGACGGGAGAGTCACTGTGGTCTGAGATTCTTTGAGTATCTGCTGGTGGTCAGTCTGAGGAAGAGGAGCAGCGGGGTGGGGTACGAGCCACAGGTCACTTACCAGTTCCCTAAGcgtgAGGTGATGGGGCGGCTGCAGCGCGAGCAGGAGGAGAAGAGCATGAAGGCGGCTCATCTGTTCTGCTTCCCTGAGGGAGTCCACTGGGCCCCAGTGACAGAGtacagcagCGAGACGTTCTCCTTCGTTCTGACTGAAGTGGACGGCAGCCGCAGGAACGGCTACTGCAGGAGGCTGCTGCCGGCAGGTAAAGGTGCTCGTCTTCCTGAAGCGTACTGCATCATCAGCCATGTGGCCTGTTTCGGCCTCTTCTCAAAGatctttGATGAGGTGGAGAAGCGCCGGCAGATCTCCACAGCCATGATTTACCCGTTCATGCAGAGTCTGCGGGAGGCACCGCTGCCTTCACCCGGCAGCACCGTCAGCATCAGCAGCTTCATCCCGGACGCCGGCACACagATCATCCGGCTGACGCGGCCTGCAGACTCCTGGCTGGAGCATGTGGATTTCACTGCGCTTTTCAGCCGTCTGAACGATGAGGAGCTGCTGCTGGTGTTCACCGCTGCTGTGCTGGAGCGACGAATCATCTTCATCTCAGAGGAGCTCAgcactCTCTCGCAGGTTCTTCATGCTGTAGCAGCGCTCCTGTATCCATTTGTGTGGCAGCACACGTTTATATCAATCGTTCCTTCAGTTCTGATCGACGTTTGTGAAGCACCGACTCCATACCTGCTGGGTGTTCAGAAGAGCATGATGGGGCTGATCACGGACCACAGCGAcGTGATGATTGTTGATCTGTCGACTGGAGCGCCAACTAAATTCATCACAAGAATTGGAGATGAGGAGTCTCTGCTGCCGCTGAAGCTGAAGGAAGAGCTGCTGTCGGGATTGTCCGCGCGCACGCACCACGCCTCTACAGAGCAGCTGAACCGGCTGGTGTCAGAGGCCTTCCTGTCCGTATTCGTCAAGACTGTCGGCCATTTCTCGGAGCACATTAAGCGTGGCGGGAAACCCCGGCAGTTCCAGAAGAAGAGCTTCCTGAAAGCAGTGGAAAACAAAACCTACAGCAGCTTTGTTAAGCTCTTCATCCAGACGCAGATGTTTGACCTGTTCATacaggaagaggaaacacaatcTAACCCTAATGGCTTCTTTCACAGGAAGGTGAAGGAACATCGCGACAGGATGAAGCAGGAGAAGGCGAAGGCTGGGTGGGTGCGAGGTGTGGTGATTTGAgcacttttattttgacacaatCGCCTGAACAAATCTAATGCTGATTATTGTTTtaccataataaaatattaagctATATCCGAAATGCTGCTCGTTCGAAAATCTCAGCTCATATTTTCAACAATATCCGAAGAACAAAAACGAGAAACTGTGTGTAGTATTATTTCCAGTCAAATCTGACTTCTGTCTGTGTGTAATCGTCATTAGTGTGTTGCAGTATTGTAATAAGTATTACAATaaagtttgttttaaaatatgaa

Function

symbol description
dennd2db Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be active in cytosol and nucleoplasm. Orthologous to human DENND2D (DENN domain containing 2D).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005829 cytosol cellular_component
GO:0005654 nucleoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-34 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be active in cytosol and nucleoplasm. Orthologous to human DENND2D (DENN domain containing 2D).

Ensembl:

ensembl_id ENSDARG00000030250

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039752 True 1797 mRNA 0.52 13 835728 856886

Neighbor

gene id symbol gene type direction distance location
XLOC_019924 NA coding upstream 18101 811600 ~ 817627 (+)
XLOC_019923 cry3b coding upstream 26446 786556 ~ 809282 (+)
XLOC_019922 znf76 coding upstream 82336 737211 ~ 753392 (+)
XLOC_019921 zgc:162255 coding upstream 102389 724639 ~ 733339 (+)
XLOC_019920 gpr37l1a coding upstream 134623 696931 ~ 701105 (+)
XLOC_019926 stk38b coding downstream 26792 883678 ~ 898645 (+)
XLOC_019927 NA coding downstream 66625 923511 ~ 938827 (+)
XLOC_019928 def6b coding downstream 121981 978867 ~ 996521 (+)
XLOC_019929 pparda coding downstream 140952 997838 ~ 1019152 (+)
XLOC_019930 si:ch73-352p18.4 coding downstream 171838 1028724 ~ 1042756 (+)
XLOC_019910 NA non-coding upstream 526524 240168 ~ 309204 (+)
XLOC_019909 NA non-coding upstream 548539 219167 ~ 287189 (+)
XLOC_019902 NA non-coding upstream 775360 51545 ~ 60368 (+)
XLOC_019903 NA non-coding upstream 778988 53914 ~ 56740 (+)
XLOC_019938 CU570769.1 non-coding downstream 392902 1249788 ~ 1267820 (+)
XLOC_019944 NA non-coding downstream 459866 1316752 ~ 1364861 (+)
XLOC_019947 BX322657.1 non-coding downstream 520445 1377331 ~ 1384069 (+)
XLOC_019963 AL954741.1 non-coding downstream 719977 1576863 ~ 1577746 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G378399 NA non-coding CI01000186 null 240855 ~ 241071 (-)