G9935


Basic Information

Item Value
gene id G9935
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11300418 ~ 11301310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU11910
ccaatagactatgtacagctgcagcgatcggttagctgctcagatagcagatgtttgaagttggtgagggagataaaagtctccaacttcagcgatttttgcaattcgttccaatcacaggcagcagagaactggaacgaaaggcggccaaatgaggtgttggctttagggatgatcagtgagatacacctgctggagcgcgtgctacggatgggtgttgccatcgtaaccagtgaactgagataaggcggagctttacctagcatggacttgtagatgacctggagccagtgggtctggcgacgaatatgtagcgagggccagccgactagagcatacaagtcgcagtggtgggtggtataaggtgctttagtgacaaaacggatggcactgtgataaactgcatccagtttgctgagtagagtgttggaagcaattttgtagatgacatcgccgaagtcgaggatcggtaggatagtcagttttactagggtaagtttggcggcgtgagtgaaggaggctttgtcaggcgtgcgggtgcaggcagcgaacggttgaaaagcatgcatttggttttactagcgtttaagagcagttggaggccatggaaggagtgctgtatggcattgaagctcgtttggaggttagatagcacagtgtccaaggacgggccggaagtatatagaatggtgtcgtctgcgtagaggtggatcagggaatcgcccgcagcatgagaaacatc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11910 True 742 lncRNA 0.31 2 11300418 11301310

Neighbor

gene id symbol gene type direction distance location
gipc3 LOC106574151 coding upstream 1137470 10140230 ~ 10162948 (+)
lim2.2 LOC106574149 coding upstream 1192530 10104169 ~ 10107888 (+)
asb3 LOC106574148 coding upstream 1198781 10096943 ~ 10101637 (+)
ftsj3 ftsj3 coding upstream 1203661 10087300 ~ 10096757 (+)
LOC110533060 gnb4 coding upstream 1251741 10012701 ~ 10048677 (+)
LOC110523899 LOC106574090 coding downstream 131792 11433102 ~ 11514427 (+)
LOC110534079 LOC106574089 coding downstream 363298 11664608 ~ 11666692 (+)
ccdc50 ccd50 coding downstream 544409 11845719 ~ 11879266 (+)
LOC110534540 LOC106574080 coding downstream 602381 11903691 ~ 11906713 (+)
LOC110534688 LOC106573995 coding downstream 621266 11922576 ~ 12025076 (+)
G9934 NA non-coding upstream 1447 11298744 ~ 11298971 (+)
G9929 NA non-coding upstream 9730 11290488 ~ 11290688 (+)
G9920 NA non-coding upstream 24596 11275521 ~ 11275822 (+)
G9913 NA non-coding upstream 40363 11259749 ~ 11260055 (+)
G9909 NA non-coding upstream 47161 11252942 ~ 11253257 (+)
G9895 NA non-coding downstream 12002 11313312 ~ 11314922 (+)
G9953 NA non-coding downstream 35982 11337292 ~ 11338110 (+)
G9955 NA non-coding downstream 41704 11343014 ~ 11344023 (+)
G9970 LOC106574093 non-coding downstream 57977 11359287 ~ 11360838 (+)
G9980 NA non-coding downstream 74113 11375423 ~ 11376798 (+)
LOC110510920 LOC106574155 other upstream 1308876 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 1840465 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 3044540 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 3070183 8229189 ~ 8231566 (+)
LOC110538561 LOC106574035 other downstream 1937303 13238613 ~ 13295452 (+)
G12410 NA other downstream 2327553 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 2891146 14192456 ~ 14214939 (+)
G13380 NA other downstream 3378040 14679350 ~ 14679578 (+)

Expression


Co-expression Network