G9895


Basic Information

Item Value
gene id G9895
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11313312 ~ 11314922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU11870
CCAGTATAGATATTTTAATCCACTGTCTTCAAACTTCATTGCTGAAGAGAGCATCAAAATATgaacaaaaaaaaatatctacATTTTATCCAAGTCAAGACACAGGGGTTTAAAGGCATTGGATTGGTGCACAAGTATGGTTGGAGGGAGTTTACACCATATTCTTCACACCAGTCCATTACTTACACCAGTCCATTCCTTTAAAACCACGAAGGGGAATGTATGAGCACAGTTTtagagaagggtagagaattTGACGGCAAGATTACACTTGGCAGATGAGGAGAAATAGACTTAAGGGCAGTAAAAATCAAATGGTGACCCCCTACGGGCTTTGGAACACTTTCCCCTCCTTTAAAACTTGAGCCTCTTTGGGATTCTGCTTGTGTTGTTGCCAGAGAACAGGGGAGCAGTAACAGCTGTAGTTATACCTCCGCTGAGCTCCAACCGCATTGGCCTGCAGGGAATGAGTGGTGTGCAGGATGAGCAAGGACAGACAGACGgcggaggagaagagatgggttATAAACATGCAAAAGGAAAGGAACACTACACAAGCTGGCTATAACAACTCAGTTTAATTCCTATGAAATAAAGCCTCTTCACAGTAGGTTTCCACATAGGAACATTGATCTGTCATGACATTCTATTGTAATAACAGCTCAATTACATGGCTAGTATGACATTAACAGATTTGATTCACACACAAAGGCTTGCACTATGTATAATGTGACTGTGGGTATGAGAAACATGCTTCCCCAGTCATCCAGGATAGCACCTCTATAAAGATAGTTAACATACCATTTGAAAATGCAGGTTTTGTTTACTGGAGTAGAAATTCAATTTACCTCTCTCTAAAATCTCAAAAAAGAATAATAATTTCATAATCAAAGCATTTTCTCGGATCACCTCGTGAGGTTAATATATTCACAAAATAAACATAGAAAGAATAGTCATACGAACAGACAACGTCGAATAGTAACATTGATTTTTTACGAAGAATGCTACAAAACAAAGCCCAGAGAAGTTCTGGAGTTGGAAAACGTGAGCAATGTGAACATGATGGTTTTTGGGTTTGTTCGATACAGGGACACATTCAGAACTACTGCAACACATCTTCACAAAATTCAATGGTTCTGCAGACAAGATTACAATAAAGTGTAACTACCACGGTTGCATTTCCCCCCAACAAAATGTTTTATCTTTGTACAAGGATTTTATATCAATATATGAATAAGACATTTAAATACTTGTCAACCCCCCTGTAATACATCTCCACCCTTTCCCCAGGACCTCTCACAAACAAAAATACATTATTGAAACTGTACACAAATATTCTGTCCatatgctgttctgtttcattgtaAGCAGTTGGTATAGCTTCTATTAAAAAATAGTTCTTGCTGGTTTCATAGATGAACACAAAAAAGCTGACGTCACCGTTCTGTAAAAGCGGGTAAATAACTGGATAGAAAGAGGTGAGGTGATGATGCTTGTGAGTCTATTCGTGTCTATACATTTTGCGTTTTGCACAAATGGCAGACCAACACAGAAGAAGGGGAAAAGAAGCCTCCTCTTGCGCTGCAGTTCTAGGAACAGCCCATAACCACA
>TU11864
GGCTATAACAACTCAGTTTAATTCCTATGAAATAAAGCCTCTTCACAGTAGGTTTCCACATAGGAACATTGATCTGTCATGACATTCTATTGTAATAACAGCTCAATTACATGGCTAGTATGACATTAACAGATTTGATTCACACACAAAGGCTTGCACTATGTATAATGTGACTGTGGGTATGAGAAACATGCTTCCCCAGTCATCCAGGATAGCACCTCTATAAAGATAGTTAACATACCATTTGAAAATGCAGGTTTTGTTTACTGGAGTAGAAATTCAATTTACCTCTCTCTAAAATCTCAAAAAAGAATAATAATTTCATAATCAAAGCATTTTCTCGGAT
>TU11865
GGCTATAACAACTCAGTTTAATTCCTATGAAATAAAGCCTCTTCACAGTAGGTTTCCACATAGGAACATTGATCTGTCATGACATTCTATTGTAATAACAGCTCAATTACATGGCTAGTATGACATTAACAGATTTGATTCACACACAAAGGCTTGCACTATGTATAATGTGACTGTGGGTATGAGAAACATGCTTCCCCAGTCATCCAGGATAGCACCTCTATAAAGATAGTTAACATACCATTTGAAAATGCAGGTTTTGTTTACTGGAGTAGAAATTCAATTTACCTCTCTCTAAAATCTCAAAAAAGAATAATAATTTCATAATCAAAGCATTTTCTCGGATCACCTCGTGAGGTTAATATATTCACAAAATAAACATAGAAAGAATAGTCATACGAACAGACAACGTCGAATAGTAACATTGATTTTTTACGAAGAATGCTACAAAACAAAGCCCAGAGAAGTTCTGGAGTTGGAAAACGTGAGCAATGTGAACATGATGGTTTTTGGGTTTGTTCGATACAGGGACACATTCAGAACTACTGCAACACATCTTCACAAAATTCAATGGTTCTGCAGACAAGATTACAATAAAGTGTAACTACCACGGTTGCATTTCCCCCCAACAAAATGTTTTATCTTTGTACAAGGATTTTATATCAATATATGAATAAGACATTTAAA
>TU11867
GGCTATAACAACTCAGTTTAATTCCTATGAAATAAAGCCTCTTCACAGTAGGTTTCCACATAGGAACATTGATCTGTCATGACATTCTATTGTAATAACAGCTCAATTACATGGCTAGTATGACATTAACAGATTTGATTCACACACAAAGGCTTGCACTATGTATAATGTGACTGTGGGTATGAGAAACATGCTTCCCCAGTCATCCAGGATAGCACCTCTATAAAGATAGTTAACATACCATTTGAAAATGCAGGTTTTGTTTACTGGAGTAGAAATTCAATTTACCTCTCTCTAAAATCTCAAAAAAGAATAATAATTTCATAATCAAAGCATTTTCTCGGATCACCTCGTGAGGTTAATATATTCACAAAATAAACATAGAAAGAATAGTCATACGAACAGACAACGTCGAATAGTAACATTGATTTTTTACGAAGAATGCTACAAAACAAAGCCCAGAGAAGTTCTGGAGTTGGAAAACGTGAGCAATGTGAACATGATGGTTTTTGGGTTTGTTCGATACAGGGACACATTCAGAACTACTGCAACACATCTTCACAAAATTCAATGGTTCTGCAGACAAGATTACAATAAAGTGTAACTACCACGGTTGCATTTCCCCCCAACAAAATGTTTTATCTTTGTACAAGGATTTTATATCAATATATGAATAAGACATTTAAATACTTGTCAACCCCCCTGTAATACATCTCCACCCTTTCCCCAGGACCTCTCACAAACAAAAATACATTATTGAAACTGTACACAAATATTCTGTCCatatgctgttctgtttcattgtaAGCAGTTGGTATAGCTTCTATTAAAAAATAGTTCTTGCTGGTTTCATAGATGAACACAAAAAAGCTGACGTCACCGTTCTGTAAAAGCGGGTAAATAACTGGATAGAAAGAGGTGAGGTGATGATGCTTGTGAGTCTATTCGTGTCTATACATTTTGCGTTTTGCACAAATGGCAGACCAACACAGAAGAAGGGGAAAAGAAGCCTCCTCTTGCGCTGCAGTTCTAGGAACAGCCCATAACCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11870 False 1611 lncRNA 0.45 1 11313312 11314922
TU11864 False 346 lncRNA 0.46 1 11313872 11314217
TU11865 False 687 lncRNA 0.49 1 11313872 11314558
TU11867 True 1051 lncRNA 0.46 1 11313872 11314922

Neighbor

gene id symbol gene type direction distance location
gipc3 LOC106574151 coding upstream 1150364 10140230 ~ 10162948 (+)
lim2.2 LOC106574149 coding upstream 1205424 10104169 ~ 10107888 (+)
asb3 LOC106574148 coding upstream 1211675 10096943 ~ 10101637 (+)
ftsj3 ftsj3 coding upstream 1216555 10087300 ~ 10096757 (+)
LOC110533060 gnb4 coding upstream 1264635 10012701 ~ 10048677 (+)
LOC110523899 LOC106574090 coding downstream 118180 11433102 ~ 11514427 (+)
LOC110534079 LOC106574089 coding downstream 349686 11664608 ~ 11666692 (+)
ccdc50 ccd50 coding downstream 530797 11845719 ~ 11879266 (+)
LOC110534540 LOC106574080 coding downstream 588769 11903691 ~ 11906713 (+)
LOC110534688 LOC106573995 coding downstream 607654 11922576 ~ 12025076 (+)
G9935 NA non-coding upstream 12002 11300418 ~ 11301310 (+)
G9934 NA non-coding upstream 14341 11298744 ~ 11298971 (+)
G9929 NA non-coding upstream 22624 11290488 ~ 11290688 (+)
G9920 NA non-coding upstream 37490 11275521 ~ 11275822 (+)
G9913 NA non-coding upstream 53257 11259749 ~ 11260055 (+)
G9953 NA non-coding downstream 22370 11337292 ~ 11338110 (+)
G9955 NA non-coding downstream 28092 11343014 ~ 11344023 (+)
G9970 LOC106574093 non-coding downstream 44365 11359287 ~ 11360838 (+)
G9980 NA non-coding downstream 60501 11375423 ~ 11376798 (+)
G10208 NA non-coding downstream 200263 11515185 ~ 11515414 (+)
LOC110510920 LOC106574155 other upstream 1321770 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 1853359 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 3057434 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 3083077 8229189 ~ 8231566 (+)
LOC110538561 LOC106574035 other downstream 1923691 13238613 ~ 13295452 (+)
G12410 NA other downstream 2313941 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 2877534 14192456 ~ 14214939 (+)
G13380 NA other downstream 3364428 14679350 ~ 14679578 (+)

Expression


Co-expression Network