G9953


Basic Information

Item Value
gene id G9953
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11337292 ~ 11338110 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU11929
cttctgaaatagactacattttcttcatatcatgtttctttagacctgtctaaaatatataatggatttattgtgaaggtgtaggctatattacaaggatttattgtgaaggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacttggattcattgtgaaggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacatggattcattgtgatggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacatggattcattgtgatggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacatggattcattgtgatggtgtaggctatattacatggattcattgtgatggtgtaggctatattacatggattcattgtgatggtgtaggctatattacatggattcattgtgatggtgtaggctatattacatggattcattgtgatggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacatggattcattgtgatggtgtaggctatatta

Function

NR:

description
PREDICTED: early nodulin-75-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11929 True 786 lncRNA 0.41 2 11337292 11338110

Neighbor

gene id symbol gene type direction distance location
gipc3 LOC106574151 coding upstream 1174344 10140230 ~ 10162948 (+)
lim2.2 LOC106574149 coding upstream 1229404 10104169 ~ 10107888 (+)
asb3 LOC106574148 coding upstream 1235655 10096943 ~ 10101637 (+)
ftsj3 ftsj3 coding upstream 1240535 10087300 ~ 10096757 (+)
LOC110533060 gnb4 coding upstream 1288615 10012701 ~ 10048677 (+)
LOC110523899 LOC106574090 coding downstream 94992 11433102 ~ 11514427 (+)
LOC110534079 LOC106574089 coding downstream 326498 11664608 ~ 11666692 (+)
ccdc50 ccd50 coding downstream 507609 11845719 ~ 11879266 (+)
LOC110534540 LOC106574080 coding downstream 565581 11903691 ~ 11906713 (+)
LOC110534688 LOC106573995 coding downstream 584466 11922576 ~ 12025076 (+)
G9895 NA non-coding upstream 22370 11313312 ~ 11314922 (+)
G9935 NA non-coding upstream 35982 11300418 ~ 11301310 (+)
G9934 NA non-coding upstream 38321 11298744 ~ 11298971 (+)
G9929 NA non-coding upstream 46604 11290488 ~ 11290688 (+)
G9920 NA non-coding upstream 61470 11275521 ~ 11275822 (+)
G9955 NA non-coding downstream 4904 11343014 ~ 11344023 (+)
G9970 LOC106574093 non-coding downstream 21177 11359287 ~ 11360838 (+)
G9980 NA non-coding downstream 37313 11375423 ~ 11376798 (+)
G10208 NA non-coding downstream 177075 11515185 ~ 11515414 (+)
G10223 NA non-coding downstream 196191 11534301 ~ 11534536 (+)
LOC110510920 LOC106574155 other upstream 1345750 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 1877339 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 3081414 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 3107057 8229189 ~ 8231566 (+)
LOC110538561 LOC106574035 other downstream 1900503 13238613 ~ 13295452 (+)
G12410 NA other downstream 2290753 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 2854346 14192456 ~ 14214939 (+)
G13380 NA other downstream 3341240 14679350 ~ 14679578 (+)

Expression


Co-expression Network