XLOC_019929 (pparda)


Basic Information

Item Value
gene id XLOC_019929
gene name pparda
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 997838 ~ 1019152 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039757
GGAAAATAACCCCAACGGAAGGAGTTAACGGGCCTTCCAAGAGGAAAGATCTGTGAAAAAGAGCAGTGATGAGGGCAGCGGCGGCAgctcatgagtgtgtgtgagatggACAGGAGACACGTTCTGGCCCTCAGGAGCCGATTACCCAGAAACCTCGGCTCAGTGGGCGGAGTCTACATGGACCCCGGAGACTCCTCCCCCTGCAGCAGTCAAGGGGAGGGGCCCGACGACCAGCGTCTGCAGGATGTGCTGTGCGAGCTGGGGGAGGGGGCGGGGCTTAACCTGGAGCTGGAGTCTGAGGGGGGCGTGGCTCTGCAGGGGGAGGAGCTTAGCTGGGAGACGAGCCGGCAGGAGGAGCAGAGCAACACCAGCTCAACCAGTCCTGACCGCAGCAGCGCCTCCACAGatCTCTCCACAGCTCTCTCCGAGCAGCTCCTGCGGGGTCGTGAGGAGGTCTCGGGGATCAACATGGAGTGTCGGATCTGTGGAGATCGTGCCTCAGGCTTTCACTACGGCGTCCACGCCTGCGAGGGCTGCAAGGGATTTTTCCGGAGGACCATTCGTATGAAGCTGGAGTACGAGAGATGCGAGCGCAGCTGTAAGATCCAGAAGAAGAGTCGCAATAAATGCCAGTTCTGCCGCTTTCAGAAGTGCCTGATGCTCGGGATGTCTCACGACGCGATCCGCTATGGCCGTATGCCAGAGGCGGAGAAGCGTAAGCTAGTCGCAGGTCTGCTAGCTGGAGAAAGGGGCTCTCAGAACTCCAACGAGTCCGATCTGAAGACTCTGGCCAAACGGGTCAACAACGCCTACCTGAAGAACCTGAACATGACCAAGAAGAAGGCCAGAAACATCCTGACCGGCAAGACCAGCGCCAGCACGCCGTTTGTGATCCACGACATGGACTCTCTGGTGCAGGCGGAGAACGGGCTGGTCTGGAACCAGGTGATCCACGGAGCGCCGCCCAATAAGGAGATCGGAGTTCACGTGTTTTACCGCTGTCAGTGCACGACCGTGGAGACCGTACGAGAGCTGACCGAGTTCTCCAAGAGCATCCCGGGCTTCATCGACCTCTTCCTCAACGACCAGGTGACGCTGCTGAAATATGGCGTCCACGAGGCCATCTTCGCCATGCTGCCGTCACTCATGAATAAAGACGGGCTGCTTGTTGCAAACGGACGGGGATTCGTGACGAGAGAGTTCCTCCGCAGTCTGCGCAAACCCTTCAGCGAGATCATGGAGCCCAAGTTTGAGTTCGCGGTCAAGTTTAACGCACTGGAGCTGGACGACAGTGACCTCGCTCTGTTCGTCGCCGCAATCATCCTGTGTGGAGATCGTCCAGGCCTCATGAACGTCCATCAGGTGGAAAAGATCCAGGACAGCATCCTCCAGGCCCTGAATCAGCACCTGCAGCTCAATCATCCCGACGGACGCTTCATCTTCCCCAGACTGCTGCAGAAGCTGGCGGACCTGCGGCAGCTGGTGACGGAGAACGCTCAGCTGGTGCAAAAGATCAAGAAGACGGAGTCCGAGACCTCGCTGCACCCGCTGCTGCAGGAGATCTACAGGGACATGTACTGACTGCCTGTCCAATCAACCGTGGAGATACCATCCGGAGAAACCCTTATTTCTACGTGAAGTGAGGATTTTGAACTGAACTCTTAAAAAGAGACAGAGTGTTCTGCAATGGAGCGTTGTGCAGGTCGTAAGTAAAACTGTTTCACACTAAACGCAA
>TCONS_00039758
atggACAGGAGACACGTTCTGGCCCTCAGGAGCCGATTACCCAGAAACCTCGGCTCAGTGGGCGGATCTGAGGGGGGCGTGGCTCTGCAGGGGGAGGAGCTTAGCTGGGAGACGAGCCGGCAGGAGGAGCAGAGCAACACCAGCTCAACCAGTCCTGACCGCAGCAGCGCCTCCACAGGTCAGGAGGAGGAACAACCACTGCAAACCATACAACTCTATTGGAGAGCTGTTAtacttaatgtgtgtgtgtgtgtgtCTCTCTCCGAGCAGCTCCTGCGGGGTCGTGAGGAGGTCTCGGGGATCAACATGGAGTGTCGGATCTGTGGAGATCGTGCCTCAGGCTTTCACTACGGCGTCCACGCCTGCGAGGGCTGCAAGGGATTTTTCCGGAGGACCATTCGTATGAAGCTGGAGTACGAGAGATGCGAGCGCAGCTGTAAGATCCAGAAGAAGAGTCGCAATAAATGCCAGTTCTGCCGCTTTCAGAAGTGCCTGATGCTCGGGATGTCTCACGACGCGATCCGCTATGGCCGTATGCCAGAGGCGGAGAAGCGTAAGCTAGTCGCAGGTCTGCTAGCTGGAGAAAGGGGCTCTCAGAACTCCAACGAGTCCGATCTGAAGACTCTGGCCAAACGGGTCAACAACGCCTACCTGAAGAACCTGAACATGACCAAGAAGAAGGCCAGAAACATCCTGACCGGCAAGACCAGCGCCAGCACGCCGTTTGTGATCCACGACATGGACTCTCTGGTGCAGGCGGAGAACGGGCTGGTCTGGAACCAGGTGATCCACGGAGCGCCGCCCAATAAGGAGATCGGAGTTCACGTGTTTTACCGCTGTCAGTGCACGACCGTGGAGACCGTACGAGAGCTGACCGAGTTCTCCAAGAGCATCCCGGGCTTCATCGACCTCTTCCTCAACGACCAGGTGACGCTGCTGAAATATGGCGTCCACGAGGCCATCTTCGCCATGCTGCCGTCACTCATGAATAAAGACGGGCTGCTTGTTGCAAACGGACGGGGATTCGTGACGAGAGAGTTCCTCCGCAGTCTGCGCAAACCCTTCAGCGAGATCATGGAGCCCAAGTTTGAGTTCGCGGTCAAGTTTAACGCACTGGAGCTGGACGACAGTGACCTCGCTCTGTTCGTCGCCGCAATCATCCTGTGTGGAGATCGTCCAGGCCTCATGAACGTCCATCAGGTGGAAAAGATCCAGGACAGCATCCTCCAGGCCCTGAATCAGCACCTGCAGCTCAATCATCCCGACGGACGCTTCATCTTCCCCAGACTGCTGCAGAAGCTGGCGGACCTGCGGCAGCTGGTGACGGAGAACGCTCAGCTGGTGCAAAAGATCAAGAAGACGGAGTCCGAGACCTCGCTGCACCCGCTGCTGCAGGAGATCTACAGGGACATGTACTGA
>TCONS_00039759
GCCTGTCCAATCAACCGTGGAGATACCATCCGGAGAAACCCTTATTTCTACGTGAAGTGAGGATTTTGAACTGAACTCTTAAAAAGAGACAGAGTGTTCTGCAATGGAGCGTTGTGCAGGTCGTAAGTAAAACTGTTTCACACTAAACGCAAAGTTAACAGGGTGTGATTGTTATCGATTACTCGCAGGGTGTTATTCAACTCGTGCAAATTTTTTATTGAGGCGAATAACAGATGCATTACGCATTTTGTATGATTTGTGTTGTGTGATGCAAATTCGCTTCTATATAATTATAgtacttaaatttatttaaaactacatGCGACGCTGAAACACAATTTAAAGCTATCTTTTCCATGTTGAAAGGAGTCTATGTTAAAAGGAATCTACCAACAATGTTCTAAACATTTAGTGTGcgaaatgttttagttttggaaatattttcaatttttgaGGCGCCATGGCCAAACAACAACATGAACTACGATGACGATGATCACCTCAGGGGctaattatgtgctttattcagtgttaaatgctactaatgtgagt

Function

symbol description
pparda Enables sequence-specific DNA binding activity. Acts upstream of or within neural crest cell development and response to activity. Located in chromatin. Is expressed in several structures, including intestine; liver; ovary; pectoral fin; and pharyngeal arch. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human PPARD (peroxisome proliferator activated receptor delta).

GO:

id name namespace
GO:0019216 regulation of lipid metabolic process biological_process
GO:0010887 negative regulation of cholesterol storage biological_process
GO:0014823 response to activity biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0033993 response to lipid biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0050728 negative regulation of inflammatory response biological_process
GO:0014032 neural crest cell development biological_process
GO:0045923 positive regulation of fatty acid metabolic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0009755 hormone-mediated signaling pathway biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0001103 RNA polymerase II repressing transcription factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-212 Enables sequence-specific DNA binding activity. Acts upstream of or within neural crest cell development and response to activity. Located in chromatin. Is expressed in several structures, including intestine; liver; ovary; pectoral fin; and pharyngeal arch. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human PPARD (peroxisome proliferator activated receptor delta).

Ensembl:

ensembl_id ENSDARG00000044525 ENSDARG00000095791

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039757 False 1735 mRNA 0.57 8 997838 1018752
TCONS_00039758 False 1419 mRNA 0.58 8 1006573 1018598
TCONS_00039759 True 552 processed_transcript 0.37 1 1018601 1019152

Neighbor

gene id symbol gene type direction distance location
XLOC_019928 def6b coding upstream 1317 978867 ~ 996521 (+)
XLOC_019927 NA coding upstream 59011 923511 ~ 938827 (+)
XLOC_019926 stk38b coding upstream 99193 883678 ~ 898645 (+)
XLOC_019925 dennd2db coding upstream 140952 835728 ~ 856886 (+)
XLOC_019924 NA coding upstream 180211 811600 ~ 817627 (+)
XLOC_019930 si:ch73-352p18.4 coding downstream 9572 1028724 ~ 1042756 (+)
XLOC_019931 camk1ga coding downstream 30215 1049367 ~ 1069407 (+)
XLOC_019932 guca1e coding downstream 73327 1092479 ~ 1109547 (+)
XLOC_019933 si:ch1073-181h11.1 coding downstream 91703 1110855 ~ 1120875 (+)
XLOC_019934 si:ch1073-181h11.2 coding downstream 103958 1123110 ~ 1130263 (+)
XLOC_019910 NA non-coding upstream 688634 240168 ~ 309204 (+)
XLOC_019909 NA non-coding upstream 710649 219167 ~ 287189 (+)
XLOC_019903 NA non-coding upstream 941098 53914 ~ 56740 (+)
XLOC_019938 CU570769.1 non-coding downstream 230636 1249788 ~ 1267820 (+)
XLOC_019944 NA non-coding downstream 297600 1316752 ~ 1364861 (+)
XLOC_019947 BX322657.1 non-coding downstream 358179 1377331 ~ 1384069 (+)
XLOC_019963 AL954741.1 non-coding downstream 557711 1576863 ~ 1577746 (+)
XLOC_019970 BX649416.2 non-coding downstream 630976 1650128 ~ 1653938 (+)

Expression


Co-expression Network