XLOC_019930 (si:ch73-352p18.4)


Basic Information

Item Value
gene id XLOC_019930
gene name si:ch73-352p18.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1028724 ~ 1042756 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039760
CAAAAGCGTTTTGAGGGTTTCGAGCAGGACTTCGGTCACATGAGATGCTGAAATCTTCCTAATACAGATTAGACGGATCAGCACTCAAATCATGAGGCCTCTGGAGGAGCGCAGAAGCAGCGATGAATGAATCAGGCCTGTGTGATTATGCTGGAATACTGGGAGACAGTGACGACAGTGATGACGATCCAAACCTAGCCAAGCAGTTAGCGGCTTCCTGGGAGAGTTTATCCATCATGGACAGACTGGGATTGAAGAGCAGTGTGGAGATGACGGAGCAGGAGGTGGAGAGCGCGTTTACCCAGTTCGTGATGGGATTTCACTGCGACCAGTACACGCTAACGCAGCGTCTGCAGGCGGAGCGACACGACCGCATCGTAGCGGAGGAGAACCTGCAGAGAGAACTGCGGCAAACCAGAGACATGCTGcagGTGTTGTATGAGCGCCTCCCAGAGGTGGACAGCAGAAACATGATTCAGCAGATGAACAGCAGCCTGCAGACGCTGGAGAGCAACGTGGACAATGTTGTCAAAACCGCGGAGATGCTCGGAGCTGCACACCAGGAGGCGCGAGTCAGTCACGCGGTGGAGCTGATGTCTGTACACCTGGAGCATCTGCAGAAACGCCATGATACAGAGAGCGAGGAGATGCTGGAGGTCAGGAAGCTGCTGCACAGGAGGAAGGGGCGATTATACAGCGACTGCACGGATGACCGAGACCTGTTCAGACATTCATCGCAACAGCCAACGCGCCGCAGGGTTAGCATCACCTTACTCCCGACTCAGTCTGAGATGAAGCAGTTGGAAACGTTATTTCTGGACAACTGCGAATCTAATGTGGAAGTGAAGAAAACCCCTGATGAGCAAACAGACAAGCGACAGGAAGTAGTTCCCGATTCTCCCTTCATCAGTCTGAGTCAAGATGATGATGGTGACAGTAGTGTGTTTCAAAGTGTGACGCAGATCTCCCCATTGTGTCACCGCCGCCGCCTAAATTCTCAAATCGAGCCAGCAGGAAGTTCATTTGAGGGGGAGGAGCCTAACACTGAGCTATGTCTCACTGCAGAACGGCGCCCCCTGCTGTCCTGGAGGTCTTCGTACAGATGGATCGTCAGAATTACGTTCACTCTAATAATGCTGATGATAGTGGCtcttttatattaatttgttattatcagTGCAAATGATCAATGATTTGACATCATTTAATTTTATCGCaccattttatgtaaaaatgagcATCGCTAATGATACTGACTGATGAATTAGAGATCGTGAGGGAGTGTAGATCACTGTGTTTCCTGCAGGCGGCAGTATCGAGTCGCTCATTTACTCATTAGCAAATGAATATAACTGGATTATAGTTgacaagtgcatgtgtgtgtcctgAACACAGAGTGCAATTAAATATTCAGATGTAATATAGTCCTGAAACAGGTGCACAGCTAAAGCAGCTGATTAATGACATTAATTCACAGTATTTACATTCAGGGAGACACTGAGAAGCTTCAGGCGGATTGATTGAGGATTCAGTAGGTGCTGCTCGTCTGAATTGTTCAGctaataaatgcatttgtttt
>TCONS_00039761
AGCCAACGCGCCGCAGGGTTAGCATCACCTTACTCCCGACTCAGTCTGAGATGAAGCAGTTGGAAACGTTATTTCTGGACAACTGCGAATCTAATGTGGAAGTGAAGAAAACCCCTGATGAGCAAA

Function

symbol description
si:ch73-352p18.4 Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane.

GO:

id name namespace
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-101 Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane.

Ensembl:

ensembl_id ENSDARG00000088584 ENSDARG00000095870

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039760 False 1579 mRNA 0.48 13 1028724 1042756
TCONS_00039761 True 126 processed_transcript 0.48 2 1039548 1039749

Neighbor

gene id symbol gene type direction distance location
XLOC_019929 pparda coding upstream 9572 997838 ~ 1019152 (+)
XLOC_019928 def6b coding upstream 32203 978867 ~ 996521 (+)
XLOC_019927 NA coding upstream 89897 923511 ~ 938827 (+)
XLOC_019926 stk38b coding upstream 130079 883678 ~ 898645 (+)
XLOC_019925 dennd2db coding upstream 171838 835728 ~ 856886 (+)
XLOC_019931 camk1ga coding downstream 6611 1049367 ~ 1069407 (+)
XLOC_019932 guca1e coding downstream 49723 1092479 ~ 1109547 (+)
XLOC_019933 si:ch1073-181h11.1 coding downstream 68099 1110855 ~ 1120875 (+)
XLOC_019934 si:ch1073-181h11.2 coding downstream 80354 1123110 ~ 1130263 (+)
XLOC_019935 GUCA1A coding downstream 95241 1137997 ~ 1146989 (+)
XLOC_019924 NA non-coding upstream 211097 811600 ~ 817627 (+)
XLOC_019910 NA non-coding upstream 719520 240168 ~ 309204 (+)
XLOC_019909 NA non-coding upstream 741535 219167 ~ 287189 (+)
XLOC_019903 NA non-coding upstream 971984 53914 ~ 56740 (+)
XLOC_019938 CU570769.1 non-coding downstream 207032 1249788 ~ 1267820 (+)
XLOC_019944 NA non-coding downstream 273996 1316752 ~ 1364861 (+)
XLOC_019947 BX322657.1 non-coding downstream 334575 1377331 ~ 1384069 (+)
XLOC_019963 AL954741.1 non-coding downstream 534107 1576863 ~ 1577746 (+)
XLOC_019970 BX649416.2 non-coding downstream 607372 1650128 ~ 1653938 (+)

Expression


Co-expression Network