G10342


Basic Information

Item Value
gene id G10342
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11644951 ~ 11645742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU12350
ccctaacggagtgttaaacgccgtcttccactcgtccccctccctgatgcgcacgagatggtaagcgttacgaaggtccaacttagtgaaaaacctggctccctgcaggatctcgaaggagagacaggagtagtagcgctcaccagtagccctccgcttactgacgagctctggccttttactggacatgaagtgacaaaatgaccagcggaaccgcaatagagacagaggcggttggtgattctccgttccctctccttagtcgagatgcggatacctcccagctgcatgggctcagcacccgagccggcagaggaagatggtagtgatgcggagagggaggcgacggagagcgcgagctcctttccacgagctcggtgacgaagatcaacccgtcgctcaatgcgaatagcgagttcaatcaaggaatccacgctggaaggaacctcccgggagagaatctcatcctttacctctgcgcggagaccctccagaagacgagcgagcaaggccggctcgttccagccactggaggcagcaagagtgcgaaactcaatagagtagtctgttatggatcgattgccttgacatagggaagacagggccctggaagcctcctccccaaaaacagatcgatcaaaaacccgtatcatctcctccttaaagtcttgatactggttaatacactcagcccttgcctcccagattgccgtgccccactcacgagcccgtccaataaggagagatatgacgtaggcgacacgagcagtgctcctggagtaagtgttgggc

Function

NR:

description
Retrotransposon-derived protein PEG10

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12350 True 792 lncRNA 0.55 1 11644951 11645742

Neighbor

gene id symbol gene type direction distance location
LOC110523899 LOC106574090 coding upstream 130524 11433102 ~ 11514427 (+)
gipc3 LOC106574151 coding upstream 1482003 10140230 ~ 10162948 (+)
lim2.2 LOC106574149 coding upstream 1537063 10104169 ~ 10107888 (+)
asb3 LOC106574148 coding upstream 1543314 10096943 ~ 10101637 (+)
ftsj3 ftsj3 coding upstream 1548194 10087300 ~ 10096757 (+)
LOC110534079 LOC106574089 coding downstream 18866 11664608 ~ 11666692 (+)
ccdc50 ccd50 coding downstream 199977 11845719 ~ 11879266 (+)
LOC110534540 LOC106574080 coding downstream 257949 11903691 ~ 11906713 (+)
LOC110534688 LOC106573995 coding downstream 276834 11922576 ~ 12025076 (+)
cpox LOC106573996 coding downstream 391983 12037725 ~ 12043817 (+)
G10328 NA non-coding upstream 12371 11632280 ~ 11632580 (+)
G10317 NA non-coding upstream 18641 11626095 ~ 11626310 (+)
G10313 NA non-coding upstream 23385 11621292 ~ 11621566 (+)
G10277 NA non-coding upstream 71514 11572864 ~ 11573437 (+)
G10265 NA non-coding upstream 81170 11563557 ~ 11563781 (+)
G10348 NA non-coding downstream 4047 11649789 ~ 11650058 (+)
G10381 NA non-coding downstream 45737 11691479 ~ 11691832 (+)
G10414 NA non-coding downstream 85283 11731025 ~ 11731290 (+)
G10441 NA non-coding downstream 123070 11768812 ~ 11769119 (+)
G10446 NA non-coding downstream 131468 11777210 ~ 11777560 (+)
LOC110510920 LOC106574155 other upstream 1653409 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 2184998 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 3389073 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 1592871 13238613 ~ 13295452 (+)
G12410 NA other downstream 1983121 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 2546714 14192456 ~ 14214939 (+)
G13380 NA other downstream 3033608 14679350 ~ 14679578 (+)
G13381 NA other downstream 3033956 14679698 ~ 14680027 (+)

Expression


Co-expression Network