G10509


Basic Information

Item Value
gene id G10509
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11890172 ~ 11890579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU12529
tgtccggtataacaccatacctactgtgaagcatgggggtggaaacatcatgctttggggctgtttttctgcaaagggaccagaacgactgatccgtgtaaaggaaataatgaatggggccatgtattgttagattttgagtgaaaacctccttccatcagcaagtgcattgaaaatgaaacgtggctggctctttcagcaggacaatgatcccaaacacatcgcccgcgcaacgaaggagtggcttcgtaagaagcatttcaaggtcttggagtggcctagccagtctccagatctcaaccccatagaaaatctttgtagggagttgaaagtccgtgttgcccagcaacagccccaaaatatcactgctctagaggagatctgcatggaggaatgggccaaaatacc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12529 True 408 lncRNA 0.33 1 11890172 11890579

Neighbor

gene id symbol gene type direction distance location
ccdc50 ccd50 coding upstream 10906 11845719 ~ 11879266 (+)
LOC110534079 LOC106574089 coding upstream 223480 11664608 ~ 11666692 (+)
LOC110523899 LOC106574090 coding upstream 375745 11433102 ~ 11514427 (+)
gipc3 LOC106574151 coding upstream 1727224 10140230 ~ 10162948 (+)
lim2.2 LOC106574149 coding upstream 1782284 10104169 ~ 10107888 (+)
LOC110534540 LOC106574080 coding downstream 13112 11903691 ~ 11906713 (+)
LOC110534688 LOC106573995 coding downstream 31997 11922576 ~ 12025076 (+)
cpox LOC106573996 coding downstream 147146 12037725 ~ 12043817 (+)
LOC110535080 LOC106574000 coding downstream 166229 12056808 ~ 12072687 (+)
LOC110535183 LOC106574001 coding downstream 224507 12115086 ~ 12147336 (+)
G10510 NA non-coding upstream 656 11889209 ~ 11889516 (+)
G10506 NA non-coding upstream 5772 11883277 ~ 11884400 (+)
G10500 NA non-coding upstream 36307 11853634 ~ 11853865 (+)
G10428 NA non-coding upstream 90936 11798256 ~ 11799236 (+)
G10512 NA non-coding downstream 1836 11892415 ~ 11892777 (+)
G10519 NA non-coding downstream 9140 11899719 ~ 11900056 (+)
G10521 NA non-coding downstream 11155 11901734 ~ 11901964 (+)
G10596 NA non-coding downstream 145967 12036546 ~ 12098355 (+)
G10598 NA non-coding downstream 155563 12046142 ~ 12048908 (+)
LOC110510920 LOC106574155 other upstream 1898630 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 2430219 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 3634294 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 1348034 13238613 ~ 13295452 (+)
G12410 NA other downstream 1738284 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 2301877 14192456 ~ 14214939 (+)
G13380 NA other downstream 2788771 14679350 ~ 14679578 (+)
G13381 NA other downstream 2789119 14679698 ~ 14680027 (+)

Expression


Co-expression Network