XLOC_019935 (GUCA1A)


Basic Information

Item Value
gene id XLOC_019935
gene name GUCA1A
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1137997 ~ 1146989 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039770
tcccgtacagcagcagcagcatgggGAACGCGCCCGGTACATCAGTGGAGGAGCTCAGCGCCTGTGAGTCTCACCAGTGGTACCGAAAATTCATGACCGAGTGTCCGTCCGGCCAGCTCACCTTCTACGAGTTCAAGAAGTTCTTCGGCCTCAAGAATCTGTCAGAGAAATCCAACGAATACGTCATGACCATGTTCCAGACGTTCGATATGAATGACgatgGCTGTATTGATTTCATGGAGTATGTGGCGGCTCTGAGTCTGATCCTGAAAGGCGGTGTTCAGCAGAAGCTGCGCTGGTATTTCAAGCTCTACGATGTGGACGGCAGCGGCTGCATCGACCGCGAGGAGCTGCTGCTCATTGTTAAGGCCATTCGAGCCATTAATGGAGTCGAGCAGGAGGTTTCAGCTGAAGAGTTTACCAACATGGTGTTTGAAAAGATCGACCTCAATGCAGACGgagtgtTGACTATGGATGAGTTTATGGAGGGCATTCAGGCAGACGAGTATCTCTCCACCATGCTGACTCAGAGTCTGGATCTCACACACATCGTCAAAAAAATCTACAGCGAGATCCACTGTGAGCAGGAGCCGCACTGACCCCAGACCAGCACACAGCAtccagatgatgatgatgaagaagaagtGGCACTGACTC
>TCONS_00039771
atgggGAACGCGCCCGGTACATCAGTGGAGGAGCTCAGCGCCTGTGAGTCTCACCAGTGGTACCGAAAATTCATGACCGAGTGTCCGTCCGGCCAGCTCACCTTCTACGAGTTCAAGAAGTTCTTCGGCCTCAAGAATCTGTCAGAGAAATCCAACGAATACGTCATGACCATGTTCCAGACGTTCGATATGAATGACgatgGCTGTATTGATTTCATGGAGTATGTGGCGGCTCTGAGTCTGATCCTGAAAGGCGGTGTTCAGCAGAAGCTGCGCTGGTATTTCAAGCTCTACGATGTGGACGGCAGCGGCTGCATCGACCGCGAGGAGCTGCTGCTCATTGTTAAGGCCATTCGAGCCATTAATGGAGTCGAGCAGGAGGTTTCAGCTGAAGAGTTTACCAACATGGTGTTTGAAAAGATCGACCTCAATGCAGACGgagtgtTGACTATGGATGAGTTTATGGAGGGCATTCAGGCAGACGAGTATCTCTCCACCATGCTGACTCAGAGTCTGGATCTCACACACATCGTCAAAAAAATCTACAGCGAGATCCACTGTGAtGGCACTGACTCCAGACCAGCAcacagatga

Function

symbol description
guca1a Enables calcium ion binding activity and calcium sensitive guanylate cyclase activator activity. Is expressed in eye and retina. Human ortholog(s) of this gene implicated in cone-rod dystrophy 14. Orthologous to human GUCA1A (guanylate cyclase activator 1A).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0030250 guanylate cyclase activator activity molecular_function
GO:0008048 calcium sensitive guanylate cyclase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-011128-5 Enables calcium ion binding activity and calcium sensitive guanylate cyclase activator activity. Is expressed in eye and retina. Human ortholog(s) of this gene implicated in cone-rod dystrophy 14. Orthologous to human GUCA1A (guanylate cyclase activator 1A).

Ensembl:

ensembl_id ENSDARG00000100747

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039770 False 657 mRNA 0.52 4 1137997 1146970
TCONS_00039771 True 594 mRNA 0.51 5 1138017 1146989

Neighbor

gene id symbol gene type direction distance location
XLOC_019934 si:ch1073-181h11.2 coding upstream 7734 1123110 ~ 1130263 (+)
XLOC_019933 si:ch1073-181h11.1 coding upstream 17122 1110855 ~ 1120875 (+)
XLOC_019932 guca1e coding upstream 28450 1092479 ~ 1109547 (+)
XLOC_019931 camk1ga coding upstream 68590 1049367 ~ 1069407 (+)
XLOC_019930 si:ch73-352p18.4 coding upstream 95241 1028724 ~ 1042756 (+)
XLOC_019936 irf6 coding downstream 23305 1170294 ~ 1182165 (+)
XLOC_019937 eps8l3a coding downstream 39877 1186866 ~ 1203405 (+)
XLOC_019938 CU570769.1 coding downstream 102799 1249788 ~ 1267820 (+)
XLOC_019939 si:ch73-138e16.2 coding downstream 129691 1276680 ~ 1282346 (+)
XLOC_019940 si:ch73-138e16.3 coding downstream 138193 1285182 ~ 1290139 (+)
XLOC_019927 NA non-coding upstream 199170 923511 ~ 938827 (+)
XLOC_019924 NA non-coding upstream 320370 811600 ~ 817627 (+)
XLOC_019910 NA non-coding upstream 828793 240168 ~ 309204 (+)
XLOC_019909 NA non-coding upstream 850808 219167 ~ 287189 (+)
XLOC_019903 NA non-coding upstream 1081257 53914 ~ 56740 (+)
XLOC_019944 NA non-coding downstream 169763 1316752 ~ 1364861 (+)
XLOC_019947 BX322657.1 non-coding downstream 230342 1377331 ~ 1384069 (+)
XLOC_019963 AL954741.1 non-coding downstream 429874 1576863 ~ 1577746 (+)
XLOC_019970 BX649416.2 non-coding downstream 503139 1650128 ~ 1653938 (+)

Expression


Co-expression Network