G10835 (LOC106574000)


Basic Information

Item Value
gene id G10835
gene name LOC106574000
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12069609 ~ 12072681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU12918
TCATGGCCAGTTTTATTGTATTAGTAAACAAAGCAGTAGGCATCAGACACACATCAGCAATCAAAtggatttataaagcccttcttacttcagctgatgtcacaaagtgctgtacagaaacccagcctaaaaccccaaacagcaggcaATGCAGATGTTGAGTCACTCAGCACACACACCTCGTTACTCCTTTACACTCCCACATTTCTACCTCAAGCGTTCCTACTCTCTTCATTGACATGTATTTTTAATGTAAAGACTTTATTTTTAAGTTATGGATGAGAGTATATTCAAAACATTTTCTATAATAGTGCAGTATTAAGAGGACTTTGTACGTAagctctgtgccatttgggagacATCTAGTGTTGCCCAAGAGGCATCACATGGGAAGTATGTGAGCGCAAAcgtggttggtggcaccttaattggggaggatggggtaaCGGCAGGAGCGgagtggtatcaaacacatggtttgacgccgttccagccattatgagccgtcctcccctggCTGTTTGATCATATCACTTCAGGCcccacacactacaacactggTCAATTGCCTTCTTCATACACCTTATCTACTACACTATATtaaagcatttaacacaaaaCCAACTCAAACTACTGTACATAGTTACATATCAACTGCTGTTATCTGAACCCGGCACAGCTGGGGTTAGGCCGCACAGTCTTCGATTATGCCTTACCGCTACTTAATGGTTTTGTGTAGCCTGAGCTAATGTTTAACCAGTAATATTTTGCCTGGAATGTGTCGTGGCCTCTGGCCTAACCAATTATACCATCTCTTGTTTGTGGCATTGGGGCGTGTACCAATAGTCTAtagtggcttcctctccttgtcaCCTCCCCTTCATGTGAAAGAAAACCACCAGTTAAACGCCTATGTTGCCTGCCTGAACCCATCCAGTCCTCTTTTAGATTACCACAGATGAAATAAAGACAAAGGTAatcaaatatactgaacaaaaatataaacgcgacatgtaaagtgttggtcccatgtttcatgagctgaaataaaagatctcagtaATTTTTCatacacaaaaagcttatctCGCTCCAATTttatgcacaaatgtgtttacatccctgttagtgagcatttctcctttgccaagatatacctgacaggtgtggtatatcaagctgattaaacggcatgatcattacacaggtgcaccttgtgctggggactttaaaaggccactctaaaatgtgcagttttgtcgcacaatacacacagatctctcaagttgagggagcgtgtaattggcTTGCGGACTGCAGGAATTTCTACTAGAGCGGTtgccagataatgtaatgttaattcCTCTACCATAAGCAACCTACAActtaattttagagaatttggcagtacgcccaaatcacagaccatgtgtaaccacgccagcccaggacctccacatccggcttcttcacctgcaggatcatctgagaccagacacctggacagctgatgaaactgaggagtatttccatctgtaataaagccctattgtggagaaaaactcattcagattggctgggcctggctccacagtgggtggacctatgccctcccagcCCATGCATGGCTGCTCCCCtgcagtcatatgaaatccatatattagggcctaattaattaattaattaaagttGACGTATTTCCTTatacgaactgtaactcagtaaaatccttgAAACTGTTGCGTTTGTATTTTTGTCCAGTATGTTAGTGGGGGTGAAGGTATGCATCCTTGATTCCTTTCCTTAGGTGAGTCTCATATTCTACTTCTTTCCTCCTCAAGATCAATCTGTCCACCTGGACTATCCTTCTGCTCTCTGATTGGTCTATGTCCAGCACTCTCACCGGTCTCTTCTTTGATTGGTCATTAATAACAAAGCATTGTGCCTGCCAACTCCTGCTGAAGTTCCTATCATAAAGCGGACCTGACATGGTTTCACTGATGTATCTTATTGGACATTAGGATTCCATTGAACTGTCTGATTGGCTCTTCAGCCTTACCACTTAGCCTATAGCAGACATCAGTCACAACACAGGCAGAGATTCCCTTGGAGAACACAACATCATAATATGAGTAAGAGTGTCCCTTTAAGCCTGTGAGCCAACCATCTGGTACAGTACAATTGTATGATGGTCTGAATGGAACCTATAGACACTACTGTTGTTAATTCGCCAACATTTTTTCTGTGAATATTTATTTTCTCTACCAGTTACATAAAACAGACTAGGTTCAGAGCAtagcccggggggggggggggggggggggggggcatgaagTTGTGTAGAgggctctcttctcctcttgcaGGGTTTAGTAGTAGTCTTCATAGTTCTTGGGGTTGAGGCAATAGAGAATGGCCCCTCCGAAGGAGAAGATGGTGGCCCCCCAGGCCAGGCCATAGCCCCAGTTAAACTCGTGGTTTATCCTCAAGCTGACCGTCTCAATGAACTTAATGGTGTAGAGGACCAGACTGCAGACCTGAAGCACCACTGCAGCGGACAGCAAGACAGCGACAGGCCTGTAGCAGCGGCTCCTGGAGCCGACACACACTGACACCAGGGCAACCAGGAAGGAGAACAGGATGAGGGCAGCACCACCCAGCAACAGGGCCAACGTGGCAATCTGCCagtctgagagggagagacaggagggcggggggcacagagagagagcgtagAAAACCCTGCTCAGTTATGTATTATGGATCTGTACTGAACACACTGTAGCACCTCTATTTGAAAGAGAGAAATTGG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12918 True 2812 lncRNA 0.39 3 12069609 12072681

Neighbor

gene id symbol gene type direction distance location
LOC110534884 LOC106573997 coding downstream 16863 12042943 ~ 12052746 (-)
uts2d uts2b coding downstream 234892 11832689 ~ 11834717 (-)
LOC110534151 LOC106574088 coding downstream 250528 11810708 ~ 11819081 (-)
LOC110524396 LOC106574087 coding downstream 267212 11799415 ~ 11802397 (-)
LOC110533997 LOC106574092 coding downstream 643643 11412825 ~ 11425966 (-)
tab3 LOC106573999 coding upstream 398 12073079 ~ 12089760 (-)
LOC118938491 NA coding upstream 114220 12186901 ~ 12205391 (-)
LOC110535561 LOC106574006 coding upstream 240025 12312706 ~ 12335747 (-)
LOC118938690 NA coding upstream 241077 12313758 ~ 12315324 (-)
LOC110525281 rnf220 coding upstream 270182 12342863 ~ 12395322 (-)
G10871 NA non-coding downstream 70170 11998493 ~ 11999439 (-)
G10806 NA non-coding downstream 169936 11899466 ~ 11899673 (-)
G10800 NA non-coding downstream 176585 11892824 ~ 11893024 (-)
G10797 NA non-coding downstream 178130 11891265 ~ 11891479 (-)
G10922 NA non-coding upstream 35574 12108255 ~ 12108896 (-)
G10923 NA non-coding upstream 36357 12109038 ~ 12109576 (-)
G10925 NA non-coding upstream 38539 12111220 ~ 12111518 (-)
G10953 LOC106574001 non-coding upstream 72398 12145079 ~ 12146085 (-)
G10792 NA other downstream 195718 11873105 ~ 11873891 (-)
G10776 NA other downstream 213219 11855710 ~ 11856390 (-)
G10343 NA other downstream 423906 11645080 ~ 11645703 (-)
G10263 NA other downstream 506484 11562737 ~ 11563125 (-)
G8455 LOC106574127 other downstream 2479023 9567941 ~ 9590586 (-)
G11037 LOC106574005 other upstream 196839 12269520 ~ 12269786 (-)
G11194 NA other upstream 342684 12415365 ~ 12415672 (-)
G12173 LOC106574030 other upstream 1147156 13219837 ~ 13220334 (-)
G12196 NA other upstream 1220724 13293405 ~ 13295453 (-)

Expression


Co-expression Network