XLOC_019938 (CU570769.1)


Basic Information

Item Value
gene id XLOC_019938
gene name CU570769.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1249788 ~ 1267820 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039775
gtcccaacgtacgTCCTgttatgcatttttaatttctacagctGCGAAAATCTGAAAACAGCCACATATTGATCAATAATGTTGTGAAAGTTAGTTTgaaattaagttatgattgaattacctcttgttagtgatgaaatagtttgataacaagcaggaaatgttcatgggtcaatgacatcaccacattgaaatggtctatattgaTTATAATAgttgttttttacagtaaaagcAGATATAATTTGAGCTGATAGTATAAAACACTTCATAATTAGTTTACCTTAAATCAAAAGACAGTTTTAAGTGAACTATGTGTTAATTAGAAGAAATATAGGATTTTAATCTTTGCAGATCTGCCCCTCCTCCTTCAGTGATGCCCCTCCCCCTTAAATGAAGCTCCTCCCTCTTCAGTTCAGCTATAAATACTGGAGTATTCCCATCAGTCTACAAGTGAAGACGAGCATCAGAGCATCAGGAAGAGGTGATATTTGAAGGACAgagagaagatgagtgatccagaaccctgcagaactGAAGAGGAAGAGGCTGAAGAGCAAACAGACTTTACTGAAGAGAATGAGGCGAATGATGATGACGGACTTGTAAAAGGCGAGAAAATCCCTCATTTATTGACTGAAGATGCTTTTGTAATGAAAAGGGAGAAGAAATgcttcacctgcactcagtgtggaataaGTTTTGGATACAAAAAAACTCTCCAGcttcacatgaggattcacactggagagaaaccgtacacatgcgctcagtgtgggaagagtttcagacattTATCAAGCTTTAATCGACACAagctgatccacactggagagaaaacacacgcATGTGATCAATGCGGCAAGACATTTTTGAGGGCTTCACAGCTGGAGATCCATCTGAGAGTTCACACTAAAGAGAAACCGTATTCATGctctgagtgtgggaagagttttagacaCCAGTCAAGTTTAAAAGaccatcagaagatccacactggagtgaAAGAGCACATGTGCTTTGAGTGTCAGAAGACTTTTGTTACAGATGGGGTGTTAAAACaacaccagaggattcacactggagagaaaccatacgtgtgttcacactgcgacaagagattcagacAGTTATCAAACCTGAAAGCACATGAGAGgagtcacactggagagaaaccgtacaagtgtgaTCAGTGTCTGAAGAGTTACACACGGTGGTCGCATCTTAAGacacacatgaaaatccacaccgGATAAAAGCAGCACACGTGACATCAACATAAGCAAAGCATTCTCTCATGTGTTGCGGGTGTGACCATCAGAAAATACTGGAGATTAGGTGTGGAAAGTAAATCCATCCGTCTCCAGTTGTTGCTTGTTCATCTCTTTCCATGATTACTACGTTTACCTAATAggcatttcatacacagtggcaattcaaagtgctttacataaacaggaataaaagaagcaagaataaaaacaaataataaaaatgattagataaaatgtgttaaaaaagaatgaagagaaagacataatagtgcgatctgctggacgcagcacagtgctcattcagtaaaggcacagctaaacagatgtgtttcagtcttgatgtgaatgtgcctaatgttggagcacatctgatcatttctggaagctgattccagcagccgggggcgctgttagtagctaAAAGCTGATTCCCCTTGCTTTGACTGAACTtatggaacttctagtttatatgatcctagagatctgagtgatctgttgggtttgtattcagtgagcatatctgtgatgtattgtgCTCTAGGCCATATAGTGATTTATAgagcagtaataatactttaaactctattctggatgtaactgggagccagagtagagacctgaggacaggtgtgatgtgctctgacttcctggttctggtcagaatcctggccgcagcgttctggatgagctgcaactgtctgactgtgtttttgggaagaccagtgtggagtccattacagtaatccaccctgctgctgataaaagcatcaacaagtttctctaagtcttcactagaaacaaagcatctgattcctGCAATGTTTCTGAGataatagtatgctgatttactgactgctttgacatgactgttgaagcTCATGAAGGTCAGAATGTAAATGTACATATAACTTATTTCAGCAGACTTgcattaaaatgttcaaaattaAAACTCTTCTCCagtgtttacattaattaaatttgttGCCAAAAGGAATCCACACATCTCTGGATCACCTGTCATGTGTTCAGGTTGGCCTAGGTTAAATACAAGCAGATATTAACATTAATTGAAatacttccctgctgaaaaatccaacttaaaccagcctaggctggtttaagctggatttttcagcagggttaagtCAGTCACTGCattcaaatatataatttaatatttgccGCCATCAATTGGGCAGctaaattgtatgagtgtgtgtgtgtgtgtgtgttgatgtttcccagagatgggttgcggctggaagggtatccgctgagtaaaaacgtgctggataagttggcggttcattccgctgtggcgaccacagattaataaagagactaagcctaaaagaaaatgaatgaattctgtaGCTATATCAGACTTTAGCTCGGTTGTTTGGcactgtttttattaattaaaatatgactTTCGCCATCTTGTGTCTTTCCCCAGGAGACTGGATTATTTTCGCGCCAGTTAAGTGTGTACAGTAAAGCATCAGGTAGGGGACATTATTTACCCCTCTTCAGCTTTCTTATTGTTTTAGATTTACTTCATAAACAGATTGTAACACTGAAATACATATTTCATGATGTATTTGGTCAAAATAGTGAGGATTAGGCCGTATGAAAACCTTTAAAAACATACATCTACCCCACACGGTACCGACTCGTCTATGTTTTGGTCCTGCATATGTTCTGCCGTCATGACGACCGTCTCCCGCTTGTGACGGAAAAACAGCATTCGCTGAGTAACACAGGCAGCCAATCAGCACTCGTTGCGCAACAAAGGCAGCCAATCAGCGTTCGCTGAGCAACACAGGCAGCCAATCGGCGTTCGCTGAGCAACGTGCAGGCAAAATATCCCGCCCTCGGCGCTTATTATGAGGTGGAGAGAGAATTAATCGGAGCGTGTGTGTAATTCCACTAATGTTACTGgtgttttgtgttcatttaaagtAAGTGTTTTATTTGTGTCATCTGTAACGTTTGTGAGTGTGATATGCTTAGCTTTGCTGCCGTTTCTTGCGGTTTAATCTGCTTCGAGTCATGTAGACAATGCTAATATACTTAGCATCCGGTTAATATCTTATATTCATTCACAGTTGCTTATACTAATGTgatttatgtacattttattaaAGGACCGTGAGTAAATGAGGCATCCAGAAAAATCCTGCAAAGCTGGAGAGACTGAAGAATGAAAAGGTTGGTGTTTATTCCTGATTGTTCAATAATGAGGCTGAAGAACATTAATAACAAAgaagttttttttcattttgtgcgCTAAAGGAATTAAAATTCCACAGAAAAACAAATAGCCTGGTTCAGTTTTCAATTATTTCCATGTATGAAACATTTATTATCATAAGATTAAATGTCATTTGCTGTGATTTATTTTAGaactgatcttttttttaatctatttgctACTA
>TCONS_00039776
AAGTGAAGACGAGCATCAGAGCATCAGGAAGAGGTGATATTTGAAGGACAgagagaagatgagtgatccagaaccctgcagaactGAAGAGGAAGAGGCTGAAGAGCAAACAGACTTTACTGAAGAGAATGAggagaatgatgatgatgatggactTGTAAAAGCTGAGAAAATCCCTCATTTATTGACTGAAGATGCTTTTGTAATGAAAAGGGAGAAGAaatgtttcacctgcactcagtgtggaaggaGTTTGGCATCCAAACAAAGTCTCCAGcttcacatgaggattcacactggagagaaaccgtacacatgcactcagtgtgggaagagtttcagacaatcATCAGCGCTTAAAACACACAagctgatccacactggagagaaaacacacacatgtgaTCAAT
>TCONS_00039777
GGTGGAGAGAGAATTAATCGGAGCGTGTGTGTAATTCCACTAATGTTACTGgtgttttgtgttcatttaaaGACCGTGAGTAAATGAGGCATCCAGAAAAATCCTGCAAAGCTGGAGAGACTGAAGAATGAAAAGACTTTATTGAAGAGAACGAGGAGAGAGAAGATGATGGACTTGCAAAAGCTGAGAAAATCCCTCATTTATTGACTAAAggtatttttaataatgaaaggAAAAGACAAGAAGTGTTTCACCTgcactgagtgtgggaagagtttgggATGCAAACCAAGTTTCCAGtttcacatgaggattcacactggagagaagccgtacacatgcactcagtgtgggaagagtttcagacaatcATCAGCGCTTAAAATACACATGCgcatccacactggagagaaaccgtacacatgtACAGAGTGTCAGAAGAGTTTTAGTCGATTAGAATACCTTAAATCACACCTGCAGATCCACattggagagaaaacacacacatgtgaTCAATGCGGCAAGACATTTATGAGGGTTTCAGAGCTGAAGAATCATCATAGAGTTCACACTAAAGAGAAACCGTATTCATGctctgagtgtgggaagagttttacacAGCAGTCACATTTAACAACACAtgagaagatccacactggagtgaAAGAGCACATGTGCTttaagtgtgagaagacttttattacagctggaGAATTGAAAAAGCATGAGAggactcacaccggagagaaaccgtacacatgtgatcagtgtctgAAGAGTTTCACACAGTTGTCGCATGTTAAGAGACACAAGAAAATTCACACTGTAGAAAAGCAACACACTTGACATCAATGAAGCTAAACAGTTTCTCGTTTGTAACGAGGTGGTGGTTGGGCTTTTTTGTATAGTGCATAGTGCCCCTAAGTTATATATAACGATATAtatttaggcatgggacgataatcgttttcaaggtataccgcca

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102371 ENSDARG00000102694

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039775 False 3712 processed_transcript 0.39 2 1249788 1262272
TCONS_00039776 False 410 processed_transcript 0.43 2 1250239 1251660
TCONS_00039777 True 985 lncRNA 0.41 3 1261725 1267820

Neighbor

gene id symbol gene type direction distance location
XLOC_019937 eps8l3a coding upstream 46383 1186866 ~ 1203405 (+)
XLOC_019936 irf6 coding upstream 67623 1170294 ~ 1182165 (+)
XLOC_019935 GUCA1A coding upstream 102799 1137997 ~ 1146989 (+)
XLOC_019934 si:ch1073-181h11.2 coding upstream 119525 1123110 ~ 1130263 (+)
XLOC_019933 si:ch1073-181h11.1 coding upstream 128913 1110855 ~ 1120875 (+)
XLOC_019939 si:ch73-138e16.2 coding downstream 8860 1276680 ~ 1282346 (+)
XLOC_019940 si:ch73-138e16.3 coding downstream 17362 1285182 ~ 1290139 (+)
XLOC_019941 si:ch73-138e16.4 coding downstream 23831 1291651 ~ 1294899 (+)
XLOC_019942 si:ch73-138e16.5 coding downstream 32767 1300587 ~ 1307143 (+)
XLOC_019943 si:ch73-138e16.6 coding downstream 45226 1313046 ~ 1376970 (+)
XLOC_019927 NA non-coding upstream 310961 923511 ~ 938827 (+)
XLOC_019924 NA non-coding upstream 432161 811600 ~ 817627 (+)
XLOC_019910 NA non-coding upstream 940584 240168 ~ 309204 (+)
XLOC_019909 NA non-coding upstream 962599 219167 ~ 287189 (+)
XLOC_019903 NA non-coding upstream 1193048 53914 ~ 56740 (+)
XLOC_019944 NA non-coding downstream 48932 1316752 ~ 1364861 (+)
XLOC_019947 BX322657.1 non-coding downstream 109511 1377331 ~ 1384069 (+)
XLOC_019963 AL954741.1 non-coding downstream 309043 1576863 ~ 1577746 (+)
XLOC_019970 BX649416.2 non-coding downstream 382308 1650128 ~ 1653938 (+)
XLOC_019971 NA non-coding downstream 392367 1660187 ~ 1665471 (+)
XLOC_019902 NA non-coding upstream 1189420 51545 ~ 60368 (+)

Expression


Co-expression Network