XLOC_019939 (si:ch73-138e16.2)


Basic Information

Item Value
gene id XLOC_019939
gene name si:ch73-138e16.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1276680 ~ 1282346 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039778
ACATTGCAGTTTAGTGTATATTATCACTGAAGTTACGGGTGTTTTGCGTCTTTTCAGTTCTACAAGTAAAGACGAGTGTCAGATCATCAGGAAGAAGTGAAATCTgaaagatgagtgatccagaaccctgcagaattaaagaGGAAGAGGAGCCCTGCAGAATTAAAGAGGAAGAGACTGAAGAGCATATAGACTTTATTGAAGAAGACGAGGATAATGAGGATGATAAATTTGTAAAAGCTGAGAACACCCCTCATTTATTGACTGAAGgtattgttttaaagcaaaaagaCCAGAAGTGTTTCCCCTGCACTGAATGTGGAATGAGTTTGACATCCAAACAGGTTCTAAAGcgtcacatgaggatccacactggagagaaaccctacacatgcactcagtgtgggaagagtttcagtcgATTGGGAACCCTTAATGTGCACCGgctgattcacactggagagaaaacacacacgtGCGATCAGTGCGGGAAAACATTTTTGACTCACTCACACCTGGAGGTCCATCATAGAGTTCACACTAAAGAGAAACCGTATTCATGctctgagtgtgggaagagttttaaatACCAGTCAAGTTTAAGAAAACATCAGACGATCCACGCTGGAGTGAGAGAGCATGTGTGCTTTATGTGTCAGAGGACTTTTATTACGGCTCAGGCCTTGAAGAATCAccagatgattcacactggagagaaaccgtacatgtGTGTTCTGTGTCTGAAGACTTTCACACAGTTGTCGCATGTGAAGGGACACATGAAattccacactggagaaaagcagcACACGTGATGATC

Function

symbol description
si:ch73-138e16.2 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF530 (zinc finger protein 530) and ZNF572 (zinc finger protein 572).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-201 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF530 (zinc finger protein 530) and ZNF572 (zinc finger protein 572).

Ensembl:

ensembl_id ENSDARG00000104894

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039778 True 820 mRNA 0.43 3 1276680 1282346

Neighbor

gene id symbol gene type direction distance location
XLOC_019938 CU570769.1 coding upstream 8860 1249788 ~ 1267820 (+)
XLOC_019937 eps8l3a coding upstream 73275 1186866 ~ 1203405 (+)
XLOC_019936 irf6 coding upstream 94515 1170294 ~ 1182165 (+)
XLOC_019935 GUCA1A coding upstream 129691 1137997 ~ 1146989 (+)
XLOC_019934 si:ch1073-181h11.2 coding upstream 146417 1123110 ~ 1130263 (+)
XLOC_019940 si:ch73-138e16.3 coding downstream 2836 1285182 ~ 1290139 (+)
XLOC_019941 si:ch73-138e16.4 coding downstream 9305 1291651 ~ 1294899 (+)
XLOC_019942 si:ch73-138e16.5 coding downstream 18241 1300587 ~ 1307143 (+)
XLOC_019943 si:ch73-138e16.6 coding downstream 30700 1313046 ~ 1376970 (+)
XLOC_019944 NA coding downstream 34406 1316752 ~ 1364861 (+)
XLOC_019927 NA non-coding upstream 337853 923511 ~ 938827 (+)
XLOC_019924 NA non-coding upstream 459053 811600 ~ 817627 (+)
XLOC_019910 NA non-coding upstream 967476 240168 ~ 309204 (+)
XLOC_019909 NA non-coding upstream 989491 219167 ~ 287189 (+)
XLOC_019947 BX322657.1 non-coding downstream 94985 1377331 ~ 1384069 (+)
XLOC_019963 AL954741.1 non-coding downstream 294517 1576863 ~ 1577746 (+)
XLOC_019970 BX649416.2 non-coding downstream 367782 1650128 ~ 1653938 (+)
XLOC_019971 NA non-coding downstream 377841 1660187 ~ 1665471 (+)

Expression


Co-expression Network