G12007


Basic Information

Item Value
gene id G12007
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13229775 ~ 13231234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU14204
ATTTGAGATACGAAAAacagacatttacattttagtaatttagcagacacttatccagagtgacttacagttcgTGCagtcatcttcagatagctaggtgggacaaccacatatcacaggcatagaaaggacatttttcctcaataaagtagctattaGTAGAGTCAGAGCTAGAAGTCAAATTCATTTTCCTATATAATGATAAATGCATATGTTGATTATAATTGACAAATACCAAGTAATGTCTTACTTCATTAGGGTTTCCTTACATTataagtgtggggggggggggggggggggggtttaatcaACTGAGGTAAACATAATTTTTCAATTTCCTTGAGTGTGTAAGAAAAATATTACTTCCCATGTACTTCAATTACTATTTAAAGGTCTGGTGCGCTGATAGCAGCCAAGAACGACCCTTAGTGTTTCTCAGTGCACTTGAATCAGTCTTCACTCCAATCTGCTTTCTTAGACATTTAGGATTACCTGGGCGAGGGGGCCTACTCAAGTTACCTCGCATCACAAGAACAATGTTATATTGAATTTTCACTACTTCTAAAACCCAGTAACATTTATGTACATAAATGTTTTAACTGTTTGATCAAACAGGTCCCCGttaccatctctccctctctgtcgacCTCTCATTTCTTATCCTCTCTGACCAGCATCTCAACCTCTCTCATGAATCGCAGACAGAGCTCATCCTGCCAGGGCAGGGCCACACACTGGACGGCCACAGGAAGCCCCTCTCCACCAGTCACTGCCTTTTGTAGAGCTTGTCCCAGAGGTCCCCATAGTTTCCCTTGTAGTGCCTGAGTTCTTCCTCATCCTCTGCTGTAACCGTGGAGACAGGAACCACCCCAGCAGGGAAGTTAAGGAGATTGTAGATAACAGTGTAGGTGAGTGTAcctggaaagagagaaggagaaacaacCTAATCACACCACTATCTTGTTACGCATTGGAAAATATGGCATGATTAAG

Function

NR:

description
PREDICTED: vitamin D3 hydroxylase-associated protein isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU14204 True 993 lncRNA 0.39 2 13229775 13231234

Neighbor

gene id symbol gene type direction distance location
LOC110526761 LOC106574030 coding upstream 5872 13214771 ~ 13223903 (+)
LOC110538273 LOC106574027 coding upstream 111412 13117319 ~ 13118363 (+)
mknk1 LOC106574026 coding upstream 114303 13104504 ~ 13115472 (+)
LOC110537958 LOC106574029 coding upstream 125187 13093674 ~ 13104588 (+)
zfyve9b LOC106574024 coding upstream 166845 13048441 ~ 13062930 (+)
LOC110538561 LOC106574035 coding downstream 28677 13238613 ~ 13295452 (+)
LOC110485223 LOC106574083 coding downstream 178048 13409282 ~ 13411290 (+)
LOC110485322 LOC106574039 coding downstream 194332 13425566 ~ 13431117 (+)
pdzk1ip1 LOC106574040 coding downstream 204782 13436016 ~ 13441528 (+)
tm2d1 LOC106574044 coding downstream 503529 13734763 ~ 13753675 (+)
G12000 NA non-coding upstream 18086 13211108 ~ 13211689 (+)
G11999 NA non-coding upstream 18962 13210464 ~ 13210813 (+)
G11586 NA non-coding upstream 47227 13181812 ~ 13182548 (+)
G11574 NA non-coding upstream 76784 13152004 ~ 13152991 (+)
G12015 NA non-coding downstream 10732 13241966 ~ 13242503 (+)
G12014 NA non-coding downstream 17910 13249144 ~ 13253879 (+)
G12029 NA non-coding downstream 54008 13285242 ~ 13285464 (+)
G12030 NA non-coding downstream 54264 13285498 ~ 13285793 (+)
G12034 NA non-coding downstream 59493 13290727 ~ 13290927 (+)
LOC110523899 LOC106574090 other upstream 1715393 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3068489 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 3238233 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 3769822 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 4973897 8255142 ~ 8271732 (+)
G12410 NA other downstream 397629 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 961222 14192456 ~ 14214939 (+)
G13380 NA other downstream 1448116 14679350 ~ 14679578 (+)
G13381 NA other downstream 1448464 14679698 ~ 14680027 (+)

Expression


Co-expression Network