G12014


Basic Information

Item Value
gene id G12014
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13249144 ~ 13253879 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU14211
TTCAACACTTAATTTATAATTTATTCACATGAACAAATACAGTGTGTATGAGGTTACAACTTAGACTCAGAGGAATCCTTTAAAACCAGGTACTTGTCACTTAAGTTAAATGGTAGTTGTCTATATCTGACAAGGAACTTCTGCCAGTAGTGCAGGGAGCTGGAGGGACTTTACTTGACAGAATGGAAGACTTTGTGAGCCACACAGTCCTCCAGTTTCGCCCTGGCGTGGACGCAGTGCTCTGCCTGCGCACACTTGTCCCGCACCACCTCAAGGGGGTCCTGGAACAGATAAACCAAGGTCAATAAGTACACAAACCATCTATTCCCctgcctggtctcagatct
>TU14214
TTCAACACTTAATTTATAATTTATTCACATGAACAAATACAGTGTGTATGAGGTTACAACTTAGACTCAGAGGAATCCTTTAAAACCAGGTACTTGTCACTTAAGTTAAATGGTAGTTGTCTATATCTGACAAGGAACTTCTGCCAGTAGTGCAGGGAGCTGGAGGGACTTTACTTGACAGAATGGAAGACTTTGTGAGCCACACAGTCCTCCAGTTTCGCCCTGGCGTGGACGCAGTGCTCTGCCTGCGCACACTTGTCCCGCACCACCTCAAGGGGGTCCAccatatcttcctcctcctcttcctcctcctcATCTTCAGGTTCCCCGTTCAGGATCATTTTCTCCTCGAAAACCATGACGTTTATGCTCTTGA
>TU14213
CCTTGCACCCCCTTCTTCACTGTTGGTGAAAGTGTATGGGTAGATCTCACATACACAGTGGTCCCGCGCATGGAGGAAGTCGAAAAGCTCCTCGGTGCAGTCCTCTCTGGTTTCGGACTTGGAGCCGACCCTGGATTCACAGTCCTCCAGTTTCGCCCTGGCGTGGACGCAGTGCTCTGCCTGCGCACACTTGTCCCGCACCACCTCAAGGGGGTCCAccatatcttcctcctcctcttcctcctcctcATCTTCAGGTTCCCCGTTCAGGATCATTTTCTCCTCGAAAACCATGACGTTTATGCTCTTGA

Function

NR:

description
Ubiquinol-cytochrome c reductase complex 11 kDa protein, mitochondrial precursor

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU14211 False 347 lncRNA 0.45 2 13249144 13253343
TU14214 False 376 lncRNA 0.38 4 13249144 13253879
TU14213 True 311 lncRNA 0.37 3 13253062 13253879

Neighbor

gene id symbol gene type direction distance location
LOC110526761 LOC106574030 coding upstream 25241 13214771 ~ 13223903 (+)
LOC110538273 LOC106574027 coding upstream 130781 13117319 ~ 13118363 (+)
mknk1 LOC106574026 coding upstream 133672 13104504 ~ 13115472 (+)
LOC110537958 LOC106574029 coding upstream 144556 13093674 ~ 13104588 (+)
zfyve9b LOC106574024 coding upstream 186214 13048441 ~ 13062930 (+)
LOC110538561 LOC106574035 coding downstream 6032 13238613 ~ 13295452 (+)
LOC110485223 LOC106574083 coding downstream 155403 13409282 ~ 13411290 (+)
LOC110485322 LOC106574039 coding downstream 171687 13425566 ~ 13431117 (+)
pdzk1ip1 LOC106574040 coding downstream 182137 13436016 ~ 13441528 (+)
tm2d1 LOC106574044 coding downstream 480884 13734763 ~ 13753675 (+)
G12015 NA non-coding upstream 6641 13241966 ~ 13242503 (+)
G12007 NA non-coding upstream 17910 13229775 ~ 13231234 (+)
G12000 NA non-coding upstream 37455 13211108 ~ 13211689 (+)
G11999 NA non-coding upstream 38331 13210464 ~ 13210813 (+)
G12029 NA non-coding downstream 31363 13285242 ~ 13285464 (+)
G12030 NA non-coding downstream 31619 13285498 ~ 13285793 (+)
G12034 NA non-coding downstream 36848 13290727 ~ 13290927 (+)
G12035 NA non-coding downstream 37558 13291437 ~ 13291691 (+)
G12009 NA non-coding downstream 41694 13295573 ~ 13296966 (+)
LOC110523899 LOC106574090 other upstream 1734762 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3087858 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 3257602 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 3789191 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 4993266 8255142 ~ 8271732 (+)
G12410 NA other downstream 374984 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 938577 14192456 ~ 14214939 (+)
G13380 NA other downstream 1425471 14679350 ~ 14679578 (+)
G13381 NA other downstream 1425819 14679698 ~ 14680027 (+)
G13391 NA other downstream 1446297 14700176 ~ 14700730 (+)

Expression


Co-expression Network