G12009


Basic Information

Item Value
gene id G12009
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13295573 ~ 13296966 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU14206
tgatgacagctttgcacactcttggcattctctcaaccagcttcacctggaatgcttttccaacagtcttttataggatttcccacatatggtgagcacttgttggctgcttttccttcactcgggGCGGCAGGTATTAATAGTATTTCATCTCTCCTCAGACTAATATTATTCTGTTGGTCCTGTGGGTACCTTTGCCACTGTTCCACCCCTTGTGTGTTGCGCTGTCATGGTGTATTTGTATTTAGTGGTtggagcattgggctagtaatcGAAAGTTGCacaatcgaatccccgagctgacaaggtaaaactaaGTCATTCtgcctactgttcctaggccgtcattgtaaataagaatgtgttcttaactaacttacctagttaaataaatgttttttaaaaaacaagaaaaacatcccaaaccatctcaattgggttgaggtcgggtgattgtggaggccaggtcctctgatgcaacactccatcactctccttcttggtcaaatagcccttacacagcctgaaggtgtgttgggtcattgttctgttaaaaaacaaatgatcgtcccactatgcgcaaaccagatgggatggcgtatcactgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaagtaaatcacagatcgtgtcaccagtaaagcacccccacaccatcacacctcctcctccatacatatcatacgttcacctactctgcctctcacaaacacacggcggttggaaccaaaaatcacaaatttggactcatcagaccaaaggaacagatttacaccggtctaatgtcaattgcttgtgtttcttggcccaaacaagtctcttcttcttattggtgtccttttactagttgtttctttgcagcaattcgaccatgaaggcctgattcacgcagtctgctctgaacagttgatgttgagatttgtctgttacttgaactctgtgaagcatttatttgggctaaaatttctgaggctggtaactctaatgaacttatcctaagcagcaggtaactctgggtctttcctggtgcggtcctcatgagagccagttccatcatagcgtttgatggtttttgcgactgcactggaAGAAACTTTCAGAGTTCttaatgttccatattgactaaccttcatgtctttaaagtaatgatggactgtcatttctctttgcttattttagctcttcttgccataatatggacttggtattttggcaaatagggctatgttctgtataccatccctacctggtcacaacacaaccgattggctcaaacacattaagaaggaaagaaattccacaaattaacttttaatgcacacctgttaattgaaatgcattccaggtgactacc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14206 True 1394 lncRNA 0.36 1 13295573 13296966

Neighbor

gene id symbol gene type direction distance location
LOC110538561 LOC106574035 coding upstream 121 13238613 ~ 13295452 (+)
LOC110526761 LOC106574030 coding upstream 71670 13214771 ~ 13223903 (+)
LOC110538273 LOC106574027 coding upstream 177210 13117319 ~ 13118363 (+)
mknk1 LOC106574026 coding upstream 180101 13104504 ~ 13115472 (+)
LOC110537958 LOC106574029 coding upstream 190985 13093674 ~ 13104588 (+)
LOC110485223 LOC106574083 coding downstream 112316 13409282 ~ 13411290 (+)
LOC110485322 LOC106574039 coding downstream 128600 13425566 ~ 13431117 (+)
pdzk1ip1 LOC106574040 coding downstream 139050 13436016 ~ 13441528 (+)
tm2d1 LOC106574044 coding downstream 437797 13734763 ~ 13753675 (+)
LOC110508285 LOC106574085 coding downstream 843530 14140496 ~ 14144946 (+)
G12035 NA non-coding upstream 3882 13291437 ~ 13291691 (+)
G12034 NA non-coding upstream 4646 13290727 ~ 13290927 (+)
G12030 NA non-coding upstream 9780 13285498 ~ 13285793 (+)
G12029 NA non-coding upstream 10109 13285242 ~ 13285464 (+)
G12014 NA non-coding upstream 41694 13249144 ~ 13253879 (+)
G12010 NA non-coding downstream 157 13297123 ~ 13298116 (+)
G12037 NA non-coding downstream 3664 13300630 ~ 13300849 (+)
G12039 NA non-coding downstream 6052 13303018 ~ 13303237 (+)
G12126 NA non-coding downstream 151298 13448264 ~ 13448757 (+)
G12137 NA non-coding downstream 178937 13475903 ~ 13477133 (+)
LOC110523899 LOC106574090 other upstream 1781191 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3134287 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 3304031 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 3835620 9450932 ~ 9460358 (+)
G12410 NA other downstream 331897 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 895490 14192456 ~ 14214939 (+)
G13380 NA other downstream 1382384 14679350 ~ 14679578 (+)
G13381 NA other downstream 1382732 14679698 ~ 14680027 (+)
G13391 NA other downstream 1403210 14700176 ~ 14700730 (+)

Expression


Co-expression Network