G12010


Basic Information

Item Value
gene id G12010
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13297123 ~ 13298116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU14207
tcactattattctacagtgtagaaaatagtaacaatgaagaaaccctggaatgagtaggtgtttccaaactttttcctGGGACATATACATTTATATACTGACTGTATGACATATACTCTGAAATTGAACGTACACATCTTTTGGGGTTACTTTTCTGCAATAGTGCTCTTTGACAGAGTGGCATTTTGACAGGTACATGATCAGATGTTTAGAATTGGGACATACTGTACTtaaccaagtgtgtgtgtgttatattggCACGAAATGGgataaaacattttgaaacagGAAGGTAGTACCTGAAGTTGTTTAACAATTCAGAATTGTTTTGTGTTGCAAAATTGTTGCTGCATTGTACCCAACTGAATACGGCACAGGTGAACATAATGCTCATGATATtggtttgtatttatttaaccatgtGCATATCAAACATAATTGAATGAAGGACATTGTGTTATTTATGAGTTTTTCAAATTCTCAGTGGTATATGATATTTATTTGCTATGGATCAGGTCATTGATAATGCATCAATATTGTACCATGTAATTAATGTAGGGTAATGTAAAATGACTGCAGAAGTCTTCCCTTGGACTGTTAAATCCAAGTCCAGTCACTCGTGTGGTTTGAAAGTTAAAAAATACTTTAATTAATGGGCTACACCATTATTAAAATTGTATCGGCTTACTGTGTCTGATACAAAATGGAGGAGATGCAGTTGTATAGCCTTGACTCACTTTGTATCAGACACCCTGATGAAGGCCTAAGCCGATGCGCATTAGTGTATTTTAATGTTGTATTCCATTAATGAAAGGCTTCCTAAAGTTCATACCCACCAGGTTCCTTGACTTTGATTGTTTATGCCACTTATCACTTATTTGATATTGTAATTTTCCCATACATTTTTCAATTCCTATTCCCCTCAAAAAGCACCTGTGGTTGTTTTGTAATACCTGAAGCGCTTCTGCTCTGTTTGTTTTTTAAGATGTTATA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU14207 True 994 lncRNA 0.52 1 13297123 13298116

Neighbor

gene id symbol gene type direction distance location
LOC110538561 LOC106574035 coding upstream 1671 13238613 ~ 13295452 (+)
LOC110526761 LOC106574030 coding upstream 73220 13214771 ~ 13223903 (+)
LOC110538273 LOC106574027 coding upstream 178760 13117319 ~ 13118363 (+)
mknk1 LOC106574026 coding upstream 181651 13104504 ~ 13115472 (+)
LOC110537958 LOC106574029 coding upstream 192535 13093674 ~ 13104588 (+)
LOC110485223 LOC106574083 coding downstream 111166 13409282 ~ 13411290 (+)
LOC110485322 LOC106574039 coding downstream 127450 13425566 ~ 13431117 (+)
pdzk1ip1 LOC106574040 coding downstream 137900 13436016 ~ 13441528 (+)
tm2d1 LOC106574044 coding downstream 436647 13734763 ~ 13753675 (+)
LOC110508285 LOC106574085 coding downstream 842380 14140496 ~ 14144946 (+)
G12009 NA non-coding upstream 157 13295573 ~ 13296966 (+)
G12035 NA non-coding upstream 5432 13291437 ~ 13291691 (+)
G12034 NA non-coding upstream 6196 13290727 ~ 13290927 (+)
G12030 NA non-coding upstream 11330 13285498 ~ 13285793 (+)
G12029 NA non-coding upstream 11659 13285242 ~ 13285464 (+)
G12037 NA non-coding downstream 2514 13300630 ~ 13300849 (+)
G12039 NA non-coding downstream 4902 13303018 ~ 13303237 (+)
G12126 NA non-coding downstream 150148 13448264 ~ 13448757 (+)
G12137 NA non-coding downstream 177787 13475903 ~ 13477133 (+)
G12332 NA non-coding downstream 235828 13533944 ~ 13534149 (+)
LOC110523899 LOC106574090 other upstream 1782741 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3135837 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 3305581 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 3837170 9450932 ~ 9460358 (+)
G12410 NA other downstream 330747 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 894340 14192456 ~ 14214939 (+)
G13380 NA other downstream 1381234 14679350 ~ 14679578 (+)
G13381 NA other downstream 1381582 14679698 ~ 14680027 (+)
G13391 NA other downstream 1402060 14700176 ~ 14700730 (+)

Expression


Co-expression Network