XLOC_019944


Basic Information

Item Value
gene id XLOC_019944
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1316752 ~ 1364861 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042010
GCATGAGcacATGTATATAATTCAAAAGAAGCATTAGACTGTAATTTTATTCCTTCAATAGTACAAAACATTTCACTGTCCACGCTGATTCAAACCAATACCATACATTAAAACTCCGCCCATTACAGCAGTGACAGTACAGTACAGGAATACATTTTAACGCTACTTGTCCTTTTTCCCAAATTTGCCCCAGATAATCTATATGAGCCGCCCAGAAATGAGTATAAAAAAGTTAACATTGGCTTTTATTTCCATGAAAATCTACTTAAACTGCTAGAGAACAGTTTTGCTGAACTGATTCTCACACTTGCATCTGTTTTACGCAGCCCAGAAAACATGCCTGACCAACTAGCTCAAAGTGTTTAGCCCAGAGATGGGCAAATTACGTCCCGCGGGCCATATGCGGCCCGCTGAACACTTTCATCTGGCCCGCGAGGgagttttaaaatgctgcttctgagtaaTGGTTTGGTTCAGAATTAGTAATTTAATGATGCA

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0072175 epithelial tube formation biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0035148 tube formation biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0000785 chromatin cellular_component
GO:0044427 obsolete chromosomal part cellular_component
GO:0044454 obsolete nuclear chromosome part cellular_component
GO:0005634 nucleus cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0005694 chromosome cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042010 True 498 lncRNA 0.40 2 1316752 1364861

Neighbor

gene id symbol gene type direction distance location
XLOC_019942 si:ch73-138e16.5 coding upstream 9609 1300587 ~ 1307143 (+)
XLOC_019941 si:ch73-138e16.4 coding upstream 21853 1291651 ~ 1294899 (+)
XLOC_019940 si:ch73-138e16.3 coding upstream 26613 1285182 ~ 1290139 (+)
XLOC_019939 si:ch73-138e16.2 coding upstream 34406 1276680 ~ 1282346 (+)
XLOC_019938 CU570769.1 coding upstream 48932 1249788 ~ 1267820 (+)
XLOC_019947 BX322657.1 coding downstream 12470 1377331 ~ 1384069 (+)
XLOC_019948 BX322657.3 coding downstream 19243 1384104 ~ 1407856 (+)
XLOC_019949 zgc:101130 coding downstream 56351 1421212 ~ 1424483 (+)
XLOC_019950 BX322657.2 coding downstream 66882 1431743 ~ 1433028 (+)
XLOC_019951 si:dkeyp-53d3.3 coding downstream 75841 1440702 ~ 1441490 (+)
XLOC_019927 NA non-coding upstream 377925 923511 ~ 938827 (+)
XLOC_019924 NA non-coding upstream 499125 811600 ~ 817627 (+)
XLOC_019910 NA non-coding upstream 1007548 240168 ~ 309204 (+)
XLOC_019909 NA non-coding upstream 1029563 219167 ~ 287189 (+)
XLOC_019963 AL954741.1 non-coding downstream 212002 1576863 ~ 1577746 (+)
XLOC_019970 BX649416.2 non-coding downstream 285267 1650128 ~ 1653938 (+)
XLOC_019971 NA non-coding downstream 295326 1660187 ~ 1665471 (+)
XLOC_019977 BX649416.3 non-coding downstream 360707 1725568 ~ 1732110 (+)

Expression


Co-expression Network