G12342


Basic Information

Item Value
gene id G12342
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13541453 ~ 13541669 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU14603
cccagcctggcgcaggtctacaattttgtttctggtgtcctttgacagctctttggtcttggccatagtggagtttggagtgtgactgtttgaggttgtggacaggtgtcatttatactgataacaagttcaaacaggtgccattaatacaggtaacgagtggaggacagaggagcctcttaaagaagaagttacaggtctgtgagagccagaaatc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14603 True 217 lncRNA 0.38 1 13541453 13541669

Neighbor

gene id symbol gene type direction distance location
pdzk1ip1 LOC106574040 coding upstream 99925 13436016 ~ 13441528 (+)
LOC110485322 LOC106574039 coding upstream 110336 13425566 ~ 13431117 (+)
LOC110485223 LOC106574083 coding upstream 130163 13409282 ~ 13411290 (+)
LOC110538561 LOC106574035 coding upstream 246001 13238613 ~ 13295452 (+)
LOC110526761 LOC106574030 coding upstream 317550 13214771 ~ 13223903 (+)
tm2d1 LOC106574044 coding downstream 193094 13734763 ~ 13753675 (+)
LOC110508285 LOC106574085 coding downstream 598827 14140496 ~ 14144946 (+)
LOC110485648 LOC106574045 coding downstream 620716 14162385 ~ 14171600 (+)
LOC110485979 LOC106574047 coding downstream 630850 14172519 ~ 14185257 (+)
LOC110486057 NA coding downstream 650798 14192456 ~ 14214939 (+)
G12335 NA non-coding upstream 5099 13536113 ~ 13536354 (+)
G12332 NA non-coding upstream 7304 13533944 ~ 13534149 (+)
G12137 NA non-coding upstream 64320 13475903 ~ 13477133 (+)
G12126 NA non-coding upstream 92696 13448264 ~ 13448757 (+)
G12039 NA non-coding upstream 238216 13303018 ~ 13303237 (+)
G12353 NA non-coding downstream 5233 13546902 ~ 13547117 (+)
G12356 NA non-coding downstream 6558 13548227 ~ 13548458 (+)
G12357 NA non-coding downstream 7052 13548721 ~ 13548986 (+)
G12363 NA non-coding downstream 11957 13553626 ~ 13553867 (+)
G12364 NA non-coding downstream 12696 13554365 ~ 13555155 (+)
LOC110523899 LOC106574090 other upstream 2027071 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3380167 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 3549911 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 4081500 9450932 ~ 9460358 (+)
G12410 NA other downstream 87194 13617059 ~ 13666871 (+)
G13380 NA other downstream 1137681 14679350 ~ 14679578 (+)
G13381 NA other downstream 1138029 14679698 ~ 14680027 (+)
G13391 NA other downstream 1158507 14700176 ~ 14700730 (+)

Expression


Co-expression Network