XLOC_019946 (znf45l)


Basic Information

Item Value
gene id XLOC_019946
gene name znf45l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1352192 ~ 1361148 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039786
GATGACGTCATCAGGAGTGCGCGTTCCTGGATCTTCCAAAGGCGTCCGAAGCGAGACGAGGTGCGCGTTTTACGCTATTTCGCTTGCTTTTCCGGAGTATAAAGTTACTTTTTGGACAGTTTTAAGCAGCATTGGTTTACTGATAAATCTCCGAACGAGTTTCTTCGACGCAATTATGGTTTGATGTATCTGTTTGTCCTCAATCAGTTCAGCTGTAAATATTGGAGTATTCTCATCAGTCTACAAGTAAAGATGAGCACGAGGAAGAAGTGAAATCTGCAAGTTTTTTGCACAGAGAGatgatgagtgatccagaaccctgcagaattaaagaGGAAGAATCCAGTGGAATTAAAGATGAAGAGTCTGAGGAACAAATAGaCATTATGATGGAGAATGGGGAGAAACCTCGTCATGTCAGAAAATGTCTGCCCTGCACTGAATGTGGAAAGAGTTTAACATCCAAACGGAATCTAATGCTTCATATGAgcatccacactggagagaatcCATTCGCATGTGatcagtgcgggaagagtttcaggcGGTCGTCATCTTTTAATCAACACATGCTGATTCACTCTGGAGAAAAGCCGTTCActtgtactcagtgtgggaagagtttcagactcTCGTCATTCCTTAATCAACAcacgaggatccacactggagagaaaccgttcacgtgcgctcagtgtgggaagagtttcaggcaAAAAGCAACCCTTTGGGCTCACATGAAcatccacactgaagagaaacgACACAAGTGTGATCAATGCGGCAAGACATTTGTAAGGGCTTCAGAACTGAACGAGCATCTTAGAGTtcatacaaaggagaagccttatCTATGTTCtttgtgtggaaagagttttgcacatcaaaacaatttaaaaacacatGAGAAGGtgcacactggtgtgagagagtttgtgtgctttgagtgtgaaAAGACTTTTACCACAGCTGAACATTTGAAACtccaccagaggattcacactggagagaaaccttacaagtgttcacactgcaacaaGGGGTTCAGCCGGTTAGGAAACCTCAAAACACATGAGagggttcacactggagagaaaccgtacaagtgttcgcTCTGTTACATGAGATTTAGCCAGCCAGATTCCATGAAGgtacatgagaggattcacactggagagaaaccgtacaagtgttcacactgcgacgtGACATTTACTCAGATAGGAAACCTGAAAACACAcgagaggatccacactggagagaaaccgtacaagtgttcacattGTGACAAGAGGTTCAGTCGGTCGGAATGCCTGAAGATACATCAgcggattcacactggagagaagccgtacaaGTGTTCATATTGCAACAAGAGATTTAATATGTTAGGGAACGTGAGagcacatgagaggattcacactggagagaaaccctacAAGTGTTCACAGTGTGACATGAGATTCAATCAGTTAGGAAACCTCAAAGTACAcaagagaattcacactggagagaaaccgtactaATGACACTGGTGCAGCAAAAGATTTTAATGTGTGGAAATACTTTTCATTTcagaaaatgtttgtaaatagTAGCATGAATAGTTACGCAACTAGGTACTGTGGTTAAAGTAGCTACTGAAAATTACTGTTCACTTTTAGGTAATGTATTGCGTGCATTTATATAGGTCATTTATCATGTATGACCTTACACCAAGAGCGCTTcataatcatgaggggggtctctccacaccatcacTAGTGAGTGGTGGGTGATGCTCTGGCAGCCGCAGGACAACAGCCCCAGCGCACTCACAACACACTAGCTctagagcataggtctcaaactcgattcatgtagggccgcagctctgtacagttttgctccaacccttattaaacacatctgatccaAATAATtgaggtgttcaagactactcgACACTACTAGATCAGCTGTATTTGATTTAAGCATGTATTTAAGCATGGGTTGAGAGTAGGGATTTGCTTGACCAGTTAGGCCATCACCTTTAGTCATAGCTCATGCACAGACAGTATTGAAGTTGTGCCAGTCTGTTTTTCTATCATGTTTCATAATTCCCTTGTTCACGATCGAAAATCCAAGATGCTTGAAATTCTTCCAAATGGGCCAAGAACTCTTCTCCAACAGGGAGAAGACAAGTAACACTTTTCTTGTCGAACAGCATGCCCTTGAACTTGGAGGTGCTAATTTTCAC

Function

symbol description
znf45l Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in pharyngeal arch 3-7.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-63 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in pharyngeal arch 3-7.

Ensembl:

ensembl_id ENSDARG00000105056

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039786 True 2239 mRNA 0.43 3 1352192 1361148

Neighbor

gene id symbol gene type direction distance location
XLOC_019945 CU207221.2 coding upstream 18627 1330477 ~ 1333565 (+)
XLOC_019942 si:ch73-138e16.5 coding upstream 45049 1300587 ~ 1307143 (+)
XLOC_019941 si:ch73-138e16.4 coding upstream 57293 1291651 ~ 1294899 (+)
XLOC_019940 si:ch73-138e16.3 coding upstream 62053 1285182 ~ 1290139 (+)
XLOC_019939 si:ch73-138e16.2 coding upstream 69846 1276680 ~ 1282346 (+)
XLOC_019947 BX322657.1 coding downstream 16183 1377331 ~ 1384069 (+)
XLOC_019948 BX322657.3 coding downstream 22956 1384104 ~ 1407856 (+)
XLOC_019949 zgc:101130 coding downstream 60064 1421212 ~ 1424483 (+)
XLOC_019950 BX322657.2 coding downstream 70595 1431743 ~ 1433028 (+)
XLOC_019951 si:dkeyp-53d3.3 coding downstream 79554 1440702 ~ 1441490 (+)
XLOC_019938 CU570769.1 non-coding upstream 84372 1249788 ~ 1267820 (+)
XLOC_019927 NA non-coding upstream 413365 923511 ~ 938827 (+)
XLOC_019924 NA non-coding upstream 534565 811600 ~ 817627 (+)
XLOC_019910 NA non-coding upstream 1042988 240168 ~ 309204 (+)
XLOC_019909 NA non-coding upstream 1065003 219167 ~ 287189 (+)
XLOC_019963 AL954741.1 non-coding downstream 215715 1576863 ~ 1577746 (+)
XLOC_019970 BX649416.2 non-coding downstream 288980 1650128 ~ 1653938 (+)
XLOC_019971 NA non-coding downstream 299039 1660187 ~ 1665471 (+)
XLOC_019977 BX649416.3 non-coding downstream 364420 1725568 ~ 1732110 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G522927 NA non-coding CI01000376 null 136871 ~ 138705 (-)
mexican tetra (Astyanax mexicanus) LOC103024826 NA misc NW_019172834.1 APWO02000052.1 2165849 ~ 2190398 (+)