XLOC_019947 (BX322657.1)


Basic Information

Item Value
gene id XLOC_019947
gene name BX322657.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1377331 ~ 1384069 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039787
AAATAAGTGAACCAGTGACTCAGGGTGCTAGTGTTTCTTATGTTTCCCTGAGCTCGCCTCGCGGTGATGACGTCATCAGCAGCGCGCGCTCCTGTGTCATCTGAGGCGAGTCGAGatCTGCACGTTCTCATACACTGAAGCTCCTCCCCCTTTTATGAAGCTCCTCCTCCTTTTATGAAGCTCCTCCTCCTTCAGTTCAGCTATAAATACTGGAGTATTCCCATCAGTCTACAAGTGGAGACGAGCATCAGAGCAT

Function

GO:

id name namespace
GO:0005802 trans-Golgi network cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0098791 Golgi apparatus subcompartment cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102448

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039787 True 256 lncRNA 0.50 2 1377331 1384069

Neighbor

gene id symbol gene type direction distance location
XLOC_019943 si:ch73-138e16.6 coding upstream 361 1313046 ~ 1376970 (+)
XLOC_019944 NA coding upstream 12470 1316752 ~ 1364861 (+)
XLOC_019946 znf45l coding upstream 16183 1352192 ~ 1361148 (+)
XLOC_019945 CU207221.2 coding upstream 43766 1330477 ~ 1333565 (+)
XLOC_019942 si:ch73-138e16.5 coding upstream 70188 1300587 ~ 1307143 (+)
XLOC_019948 BX322657.3 coding downstream 35 1384104 ~ 1407856 (+)
XLOC_019949 zgc:101130 coding downstream 37143 1421212 ~ 1424483 (+)
XLOC_019950 BX322657.2 coding downstream 47674 1431743 ~ 1433028 (+)
XLOC_019951 si:dkeyp-53d3.3 coding downstream 56633 1440702 ~ 1441490 (+)
XLOC_019952 si:dkeyp-53d3.5 coding downstream 78108 1462177 ~ 1466567 (+)
XLOC_019938 CU570769.1 non-coding upstream 109511 1249788 ~ 1267820 (+)
XLOC_019927 NA non-coding upstream 438504 923511 ~ 938827 (+)
XLOC_019924 NA non-coding upstream 559704 811600 ~ 817627 (+)
XLOC_019910 NA non-coding upstream 1068127 240168 ~ 309204 (+)
XLOC_019963 AL954741.1 non-coding downstream 192794 1576863 ~ 1577746 (+)
XLOC_019970 BX649416.2 non-coding downstream 266059 1650128 ~ 1653938 (+)
XLOC_019971 NA non-coding downstream 276118 1660187 ~ 1665471 (+)
XLOC_019977 BX649416.3 non-coding downstream 341499 1725568 ~ 1732110 (+)
XLOC_019991 BX640576.1 non-coding downstream 494078 1878147 ~ 1880670 (+)

Expression


Co-expression Network